View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_102 (Length: 375)
Name: NF1498_low_102
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 41946124 - 41945773
Alignment:
| Q |
1 |
aaacttgtttttctttatttgatttgtgaacataaatcatttcatgtcattagttaagacgtgataatatattgaaatatttagttttaaaaagtgttaa |
100 |
Q |
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| T |
41946124 |
aaacttgtttttctttatttgatttgtgaacataaatcatttcatgtcgttagttaagacgtgataatatattgaaatatttagttttaaaaagtgttaa |
41946025 |
T |
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| Q |
101 |
tgtaatgttttgtggatctnnnnnnntattcttagagagatcctgatgttggg-aaagagcacaattttctatagttatggcaaatggctcttaatgaag |
199 |
Q |
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| T |
41946024 |
tgtaatgttttgtggatctaaaaaaatattcttagagagatcctgatgttggggaaagagcacaattttctatagttatggcaaatggctcttaatgaag |
41945925 |
T |
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| Q |
200 |
cttttcaatcaattgtagaaaaagattagggtatatcgtggtcttggagttggaatcaaaccaacaagaggaaaacttttaagaaatttaattttttgaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41945924 |
cttttcaatcaattgtagaaaaagattagggtatatcgtggtcttggagttggaatcaaaccaacaagaggaaaacttttaagaaatttaattttttgaa |
41945825 |
T |
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| Q |
300 |
aatatgtgcttccaaggacaaagttcctaggaaagttcaaccacaaaattca |
351 |
Q |
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| T |
41945824 |
aatatgtgcttccaaggacaaagttcctaggaaagttcaaccacaaaattca |
41945773 |
T |
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