View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_106 (Length: 368)

Name: NF1498_low_106
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_106
NF1498_low_106
[»] chr3 (2 HSPs)
chr3 (10-334)||(8524833-8525157)
chr3 (235-288)||(14554452-14554505)
[»] chr5 (8 HSPs)
chr5 (10-335)||(42125378-42125703)
chr5 (10-336)||(42130603-42130929)
chr5 (10-336)||(41711685-41712011)
chr5 (11-329)||(34238763-34239081)
chr5 (11-329)||(34230708-34231038)
chr5 (21-320)||(42118787-42119090)
chr5 (79-328)||(41569923-41570172)
chr5 (236-288)||(37391642-37391694)
[»] chr6 (1 HSPs)
chr6 (11-335)||(25520922-25521246)
[»] chr4 (1 HSPs)
chr4 (10-325)||(11120152-11120467)
[»] chr2 (1 HSPs)
chr2 (10-327)||(12250199-12250516)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 8524833 - 8525157
Alignment:
10 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
8524833 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaac 8524932  T
110 ctaccaaactttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtactgttaggattga 209  Q
    | |||||||||||||||||||||||||||| | |||||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
8524933 ccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga 8525032  T
210 gtatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatcccatgagcagcaatcagtctcatt 309  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
8525033 gtatgccttgaagaccttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccatcccatgagcagcaatcaatctcatt 8525132  T
310 tttccatgttgttgttttcaaaaga 334  Q
    ||||||||||| |||||||||||||    
8525133 tttccatgttgctgttttcaaaaga 8525157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 14554452 - 14554505
Alignment:
235 aaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatccca 288  Q
    ||||| |||||||||||||||||| |  |||||||| |||||||||||||||||    
14554452 aaggtctagttcaatcacgtgacctgatatggtgtcgcacgtgacaccatccca 14554505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 42125378 - 42125703
Alignment:
10 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 109  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||    
42125378 gagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaac 42125477  T
110 ctaccaaactttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtactgttaggattga 209  Q
    | ||||||||| |||||||||| ||||  | | |||||||||| ||||||||| ||| |||||| || | |||||| ||||||||||||||||||||  |    
42125478 ccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggatgta 42125577  T
210 gtatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatcccatgagcagcaatcagtctcatt 309  Q
    || | |||||||| |||||||||||||| || ||  |||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||    
42125578 gtttaccttgaaggccttcacagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtgacaccattccatgagcagcaatcagtcccatt 42125677  T
310 tttccatgttgttgttttcaaaagag 335  Q
    ||||||||||| |||||||| |||||    
42125678 tttccatgttgctgttttcagaagag 42125703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 10 - 336
Target Start/End: Original strand, 42130603 - 42130929
Alignment:
10 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 109  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||||||||||||  |||  ||||  |||||||||||||||||| ||||||  |||     
42130603 gagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaat 42130702  T
110 ctaccaaactttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtactgttaggattga 209  Q
    | || ||||||  ||||||||| |||| |||| |||||||||| ||||||||| ||| |||| | || | ||||||| ||||||||||| ||||||||||    
42130703 ccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattga 42130802  T
210 gtatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatcccatgagcagcaatcagtctcatt 309  Q
     | | |||  ||| ||||||||||||||||| || |||||||||||||||| ||  |||||||||||||| |||| ||||||||||||||||||| ||||    
42130803 atgtacctgtaaggccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtgacgccattccatgagcagcaatcagtcccatt 42130902  T
310 tttccatgttgttgttttcaaaagagg 336  Q
    ||||||||||| |||||| | ||||||    
42130903 tttccatgttgctgttttaagaagagg 42130929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 41712011 - 41711685
Alignment:
10 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 109  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||| |||||  ||||| |||||||||||  ||||||||||||    
41712011 gagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaac 41711912  T
110 ctaccaaactttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtactgttaggattga 209  Q
    | ||||||||| ||||||||||  |||  | | |||||||||| ||||||||| ||| |||| | || | ||||||||||||| ||| | ||||||| ||    
41711911 cgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatgga 41711812  T
210 gtatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatcccatgagcagcaatcagtctcatt 309  Q
     ||| |||||||| || |||||||||||||| ||  ||| |||| |||||  || ||||||||| ||||||||   ||||||||| ||||||||||||||    
41711811 atataccttgaaggccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacaccgggccatgagcaacaatcagtctcatt 41711712  T
310 tttccatgttgttgttttcaaaagagg 336  Q
    |||||||||||||||||| | ||||||    
41711711 tttccatgttgttgtttttagaagagg 41711685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 34239081 - 34238763
Alignment:
11 agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc 110  Q
    ||||||||||||||||||||| |||||| |||||||||||  |||||||||||   ||    | ||  |||||||||||||||||| ||||||  |||||    
34239081 agatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacc 34238982  T
111 taccaaactttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtactgttaggattgag 210  Q
    | |||||||| |||| |||||| || ||| | ||| |||||| ||||||||| ||| |||| | || | ||| || |||||||||||| ||||||| |||    
34238981 tgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatggag 34238882  T
211 tatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatcccatgagcagcaatcagtctcattt 310  Q
    ||| |||||||  |||||||| |||||||| ||  |||| ||||||||||  | |||||||||||||||||||| ||||||||||||||||||| |||||    
34238881 tataccttgaaagccttcacaaccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccattt 34238782  T
311 ttccatgttgttgttttca 329  Q
    |||||||||| ||||||||    
34238781 ttccatgttgctgttttca 34238763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 34231038 - 34230708
Alignment:
11 agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc 110  Q
    ||||||||||||||||||||| ||||||  ||||||||||  ||||||||| ||| |||||||| |  ||||||||| |||||||| ||||||| |||||    
34231038 agatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacc 34230939  T
111 taccaaactttgaatgaaaataagagccaaataaatc------------attgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtact 198  Q
      |||||||| ||||||||||  |||||| | |||||            |||||  |||||||| ||  ||||||  | | |||||||||||||||||||    
34230938 cgccaaacttagaatgaaaatgggagccagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtact 34230839  T
199 gttaggattgagtatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatcccatgagcagcaa 298  Q
     ||||||| |||||| |||||||  ||||||||||||||||| ||  |||| ||||||||||  | |||||||||||||||||||| |||||||||||||    
34230838 attaggatggagtataccttgaaagccttcacagccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaa 34230739  T
299 tcagtctcatttttccatgttgttgttttca 329  Q
    |||||| ||||||||||||||| ||||||||    
34230738 tcagtcccatttttccatgttgctgttttca 34230708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 42118787 - 42119090
Alignment:
21 attgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaag-aaactacgagacaagtcaagatgtgtgagactcaaaaacctaccaaact 119  Q
    ||||||||||| | | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| | ||||||||    
42118787 attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact 42118886  T
120 ttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtactgttaggattgagtatgccttg 219  Q
    | |||||||||  |||  |  | |||| ||||   | |||||| ||| |||| | || | ||||||||||||||||| |||||||||  | | | ||       
42118887 tagaatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttaccagt 42118986  T
220 aagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatccc---atgagcagcaatcagtctcatttttccat 316  Q
    ||| | || | |||||||||| ||  ||||||||||||||| ||   || |||||| |||||||| ||   ||||||||||||||||| |||||||||||    
42118987 aaggcgttaaaagccaaggttgagaccaatcacgtgaccagagactctgacacacgcgacaccatgccatgatgagcagcaatcagtcccatttttccat 42119086  T
317 gttg 320  Q
    ||||    
42119087 gttg 42119090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 328
Target Start/End: Complemental strand, 41570172 - 41569923
Alignment:
79 agacaagtcaagatgtgtgagactcaaaaacctaccaaactttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataa 178  Q
    |||||||||||||||||| ||||||  ||| | ||||||||  ||||| ||||  |||   || |||||||||| ||||||||| |||  ||| | || |    
41570172 agacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatga 41570073  T
179 ccaagatggaaaagggtactgttaggattgagtatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtga 278  Q
     ||||||| ||||| ||  |||||||||  | | | |||||||| | ||||||||||||||  ||  |||||||| |||||| ||  | ||| |||||||    
41570072 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 41569973  T
279 caccatcccatgagcagcaatcagtctcatttttccatgttgttgttttc 328  Q
    |||||| |||||| || ||||  |||||| |||||||||||| |||||||    
41569972 caccatgccatgaacaacaatttgtctcaattttccatgttgatgttttc 41569923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 37391694 - 37391642
Alignment:
236 aggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatccca 288  Q
    |||| |||||||||||||||| | |  |||||||| |||||||||||||||||    
37391694 aggtctagttcaatcacgtgatctgacatggtgtcgcacgtgacaccatccca 37391642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 25521246 - 25520922
Alignment:
11 agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||  |||||    
25521246 agatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacc 25521147  T
111 taccaaactttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtactgttaggattgag 210  Q
     ||||||||| | ||||||||  ||||||   |||||||||| ||||||||| ||||||||||||| | ||||||||||||| ||||| ||||||| ||     
25521146 caccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaa 25521047  T
211 tatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatcccatgagcagcaatcagtctcattt 310  Q
    ||| ||||| || ||||||||||||||||| ||  |||||||| |||||    ||||||| || |||||||||| ||||||||||||||||||| ||| |    
25521046 tataccttggaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggtgtcgcatgtgacaccatgccatgagcagcaatcagtcccatat 25520947  T
311 ttccatgttgttgttttcaaaagag 335  Q
    |||||||||| |||||||| |||||    
25520946 ttccatgttgctgttttcagaagag 25520922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 11120152 - 11120467
Alignment:
10 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 109  Q
    ||||| ||| |||||||||||| |||| | |||||||||||||||||||||||| | || |  ||||  |||||||| ||||||||| ||||||  ||||    
11120152 gagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaac 11120251  T
110 ctaccaaactttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtactgttaggattga 209  Q
    | ||||||||| |||||||||  ||||||  | |||| |||||    |||||| ||| |||| | || | ||||||||||||||||||| || ||||  |    
11120252 ccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgta 11120351  T
210 gtatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatcccatgagcagcaatcagtctcatt 309  Q
     ||||||||||||||||||||||||||| || ||  |||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||    
11120352 atatgccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtcccatt 11120451  T
310 tttccatgttgttgtt 325  Q
    ||||||||||||||||    
11120452 tttccatgttgttgtt 11120467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 12250199 - 12250516
Alignment:
10 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac 109  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||| ||| | || ||     
12250199 gagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaat 12250298  T
110 ctaccaaactttgaatgaaaataagagccaaataaatcattgtcagaaaggttcagtttttgaatataaccaagatggaaaagggtactgttaggattga 209  Q
    | ||||||||| ||||||||||  |||    | |||||||||  ||||||||| ||| |||| | || | |||||| |||||||||||| ||||| |  |    
12250299 ccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttgta 12250398  T
210 gtatgccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccatcccatgagcagcaatcagtctcatt 309  Q
     ||| || | ||| ||||||  ||||||||  ||  ||||||| ||||||  ||| |||||||| |||||||||| ||||||||||||||||||| ||||    
12250399 atataccatcaaggccttcatcgccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtgacaccatgccatgagcagcaatcagtcccatt 12250498  T
310 tttccatgttgttgtttt 327  Q
    || |||||||| ||||||    
12250499 ttgccatgttgctgtttt 12250516  T

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