View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_111 (Length: 365)
Name: NF1498_low_111
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_111 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 30315293 - 30315644
Alignment:
| Q |
1 |
aagagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaat |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315293 |
aagagcagagagaatatgaagaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaat |
30315392 |
T |
|
| Q |
101 |
tccggcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315393 |
tcccgcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggt |
30315492 |
T |
|
| Q |
201 |
atatactatattctcactcagtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaatgaaattgaatgtagcctatattagtta |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30315493 |
atatactatattctcactcggtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaattaaattgaatgtagcctatattagtta |
30315592 |
T |
|
| Q |
301 |
nnnnnnnnnnnnaatgacatgttaacattatttaaaatatttggttctactt |
352 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
30315593 |
ttttttatttttaatgacatgttaacattatttaaaatatttggttctactt |
30315644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 30286712 - 30287057
Alignment:
| Q |
1 |
aagagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286712 |
aagagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaat |
30286811 |
T |
|
| Q |
101 |
tccggcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggt |
200 |
Q |
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|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
30286812 |
tccggcaggtcatccaattgtcgtaactgcttcttcggatctctctttgcttggatttggtatcaatgcggagaacaatcaaaggaacttccttgctgg- |
30286910 |
T |
|
| Q |
201 |
atatactatattctcactcagtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaatgaaattgaatgtagcctatattagtta |
300 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| | |
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| T |
30286911 |
-tatactgtattctcactcagtctct----ttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaa |
30287005 |
T |
|
| Q |
301 |
nnnnnnnnnnnnaatgacatgttaacattatttaaaatatttggttctactt |
352 |
Q |
| |
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|||||||||||||||||| |||||| ||||| |||||||| |
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|
| T |
30287006 |
ttttttatttttaatgacatgttaacattaattaaaagatttgcttctactt |
30287057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 30291746 - 30292091
Alignment:
| Q |
1 |
aagagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
30291746 |
aagagcagagagaatatgaggaagatgaacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaat |
30291845 |
T |
|
| Q |
101 |
tccggcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggt |
200 |
Q |
| |
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||| |||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
30291846 |
tccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctgg- |
30291944 |
T |
|
| Q |
201 |
atatactatattctcactcagtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaatgaaattgaatgtagcctatattagtta |
300 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| | |
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|
| T |
30291945 |
-tatactgtattctcactcagtctct----ttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaa |
30292039 |
T |
|
| Q |
301 |
nnnnnnnnnnnnaatgacatgttaacattatttaaaatatttggttctactt |
352 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||||| |
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| T |
30292040 |
ttttttatttttaatgacatgttaacattaattaaaagatttgcttctactt |
30292091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 30304380 - 30304725
Alignment:
| Q |
1 |
aagagcagagagaatatgaggaagatgaacaacaacaagaaagaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
30304380 |
aagagcagagagaatatgaggaagatgaacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaat |
30304479 |
T |
|
| Q |
101 |
tccggcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggt |
200 |
Q |
| |
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||| |||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
30304480 |
tccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctgg- |
30304578 |
T |
|
| Q |
201 |
atatactatattctcactcagtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaatgaaattgaatgtagcctatattagtta |
300 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| | |
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| T |
30304579 |
-tatactgtattctcactcagtctct----ttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaa |
30304673 |
T |
|
| Q |
301 |
nnnnnnnnnnnnaatgacatgttaacattatttaaaatatttggttctactt |
352 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||||| |
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| T |
30304674 |
ttttttatttttaatgacatgttaacattaattaaaagatttgcttctactt |
30304725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 30299187 - 30299370
Alignment:
| Q |
21 |
gaagatgaacaacaacaagaa---agaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaa |
117 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30299187 |
gaagatgaacaacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaa |
30299286 |
T |
|
| Q |
118 |
ttgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggta |
201 |
Q |
| |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
30299287 |
ctgtcgttagcgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
30299370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 46810199 - 46810333
Alignment:
| Q |
69 |
gctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatg |
168 |
Q |
| |
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|||||| |||||||||| || ||| | |||||||||||||||| ||| | | | |||| ||||||||| ||||| ||| ||||| ||||||||||||| |
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| T |
46810199 |
gctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcgaatctcaatttccttggctttggtatcaatg |
46810298 |
T |
|
| Q |
169 |
ctgagaacaatcagaggaacttccttgctggtata |
203 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| |
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|
| T |
46810299 |
ctgagaacaatcagagaaactttcttgcaggtata |
46810333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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