View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_112 (Length: 361)
Name: NF1498_low_112
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_112 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 18512386 - 18512048
Alignment:
| Q |
1 |
gttttcaatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataactgcttaaaaattgtacagg |
100 |
Q |
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| T |
18512386 |
gttttcaatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataactacttaaaaattgtacagg |
18512287 |
T |
|
| Q |
101 |
taatgaacatgtttgaattgcgaaatcacttttaaataaggtattaggtagttttgattagagttttgatcaaggtttcaacaattatataagttatatt |
200 |
Q |
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| T |
18512286 |
taatgaacatgtttgaattgcaaaatcacttttaaataaggtattaggtagttttgattagagttttgatcaaggtttcaacaattatataagttatatt |
18512187 |
T |
|
| Q |
201 |
atatggattttttagccttttaattaactttgttactttggtnnnnnnnntaaattaactttgttactttggaccaagcagggatcacgataagctaaag |
300 |
Q |
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| T |
18512186 |
atatggattttttagtcttttaattaactttgttactttggtaaaaaaaataaattaactttgttactttggaccaagca-ggatcacgataagcttaag |
18512088 |
T |
|
| Q |
301 |
caactgcgtatttcatctgattctcccagtaagcaagaca |
340 |
Q |
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| T |
18512087 |
caactgcatatttcatctgattctcccagtaagcaagaca |
18512048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 1984818 - 1984785
Alignment:
| Q |
58 |
ccatgtcatattatgtataataactgcttaaaaa |
91 |
Q |
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| T |
1984818 |
ccatgtcatattatgtgtaataactgcttaaaaa |
1984785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 14517114 - 14517348
Alignment:
| Q |
5 |
tcaatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataactgcttaaaaattgtacaggtaat |
104 |
Q |
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| T |
14517114 |
tcaatgtttgagcccacaatagcaaaagaaagcacaggtaacgatctttttaaccatgtcatattatatgtaataactatttaaaaatagtagaggtgat |
14517213 |
T |
|
| Q |
105 |
gaacatgtttgaattgcgaaatcacttttaaataaggtattaggtagttttgattagagttttgatcaaggtttcaacaattatataagttatattatat |
204 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||| |||||||||||| |
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| T |
14517214 |
gaacatgtttgaattccaaaatcacttttaaataaggtattaggtagttttgtttagagttttgatcaagttttcaactattgtat--gttatattatat |
14517311 |
T |
|
| Q |
205 |
ggattttttagccttttaattaactttgttactttgg |
241 |
Q |
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| T |
14517312 |
gggttttttggccttttaattaactttgttactttgg |
14517348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 14522102 - 14522179
Alignment:
| Q |
6 |
caatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataactg |
83 |
Q |
| |
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| T |
14522102 |
caatgtttgagcccacaatagcaaaagaaagcaaatgtaatgaactgtttaaccatgtcatattatgtgtaataactg |
14522179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 14517329 - 14517412
Alignment:
| Q |
253 |
aattaactttgttactttggaccaagcagggatcacgataagctaaagcaactgcgtatttcatctgattctcccagtaagcaag |
337 |
Q |
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| T |
14517329 |
aattaactttgttactttggaccaagcagg-atcaccataagctgaagcaactacgtacttcatctgattctcctagcaagcaag |
14517412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 6944608 - 6944572
Alignment:
| Q |
203 |
atggattttttagccttttaattaactttgttacttt |
239 |
Q |
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|||| ||||||||||||||||| |||||||||||||| |
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| T |
6944608 |
atggtttttttagccttttaatcaactttgttacttt |
6944572 |
T |
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