View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_113 (Length: 360)
Name: NF1498_low_113
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_113 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 10848886 - 10848544
Alignment:
| Q |
12 |
tttcatgtcttcaattttcagacggcttgaatcatcatccatatcattgtcaaatggaatccctatcttattcaagtctattctgtcccaaaggtcatcc |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10848886 |
tttcatatcttcaattttcagacggcttgaatcatcgtccatatcatcgtcaaatggaatccctatcttattcaagtctattctgtcccaaaggtcatcc |
10848787 |
T |
|
| Q |
112 |
aggacgacaagggtgttctccctctctttctttaacctccttcttagacgatctgctctcacagtctcaccttccccttccatattcaatcctaacacgt |
211 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10848786 |
atgacgacaagggtgttctccctctctttctttaacctccttcttagacgatctgctctcacagtctcaccttccccttccaaattcaatcctaacacgt |
10848687 |
T |
|
| Q |
212 |
acgcaatttcttcctggatttttcgcaggttgggattgttagttatttctactttaactaccacactgaacaacttcttgacttgagctttcttaacaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10848686 |
acgcaatttcttcctggatttttcgcagattgggattgtcatttatttctactataactgccacattgaacaacttcttgacttgagctttcttaacaat |
10848587 |
T |
|
| Q |
312 |
ttctttgattaaagtgctcttacccacaccacctggcctatgc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10848586 |
ttctttgattaaagtgctcttacccacaccacctggcccatgc |
10848544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 54 - 354
Target Start/End: Complemental strand, 10880237 - 10879937
Alignment:
| Q |
54 |
atcattgtcaaatggaatccctatcttattcaagtctattctgtcccaaaggtcatccaggacgacaagggtgttctccctctctttctttaacctcctt |
153 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10880237 |
atcatcgtcaaatggaatccctatcttattcaagtctattctgtcccaaaggtcatccaggacgacaagggtgttcttcctctctttctttaacctcctt |
10880138 |
T |
|
| Q |
154 |
cttagacgatctgctctcacagtctcaccttccccttccatattcaatcctaacacgtacgcaatttcttcctggatttttcgcaggttgggattgttag |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10880137 |
cttagacgatctgctctcacagtctcaccttccccttccaaattcaatcctaacacgtacgcaatttcttcctggatttttcgcaggttgggattgttag |
10880038 |
T |
|
| Q |
254 |
ttatttctactttaactaccacactgaacaacttcttgacttgagctttcttaacaatttctttgattaaagtgctcttacccacaccacctggcctatg |
353 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10880037 |
ttatttctactataactaccatactgaacaacttcttgacttgagctttcttaacaatttctttgattaaagtgctcttacccacaccacctggcccatg |
10879938 |
T |
|
| Q |
354 |
c |
354 |
Q |
| |
|
| |
|
|
| T |
10879937 |
c |
10879937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 10880321 - 10880282
Alignment:
| Q |
12 |
tttcatgtcttcaattttcagacggcttgaatcatcatcc |
51 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10880321 |
tttcatgtcttgaattttcagacggcttgaatcatcatcc |
10880282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University