View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_115 (Length: 359)
Name: NF1498_low_115
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_115 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 10013830 - 10014175
Alignment:
| Q |
10 |
attattcttgcggtaatttaatatgtgtgttttctattttgtaggacaccaaaactaaaaagattagtattgtcgtttaaaggcaaacagtccaagaatg |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10013830 |
attagtcttgcggtaatttaatatgtgtgttttctattttgtaggacaccaaaactaaaaagattagtattgtcgtttaaaggcaaacagtccaagaatg |
10013929 |
T |
|
| Q |
110 |
tagtggatattgcgatgaaatcatgggaaggccttgaatccatcaccattatcgctatcatccagccgagtcgcattttttcagccattagtaagtactg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
10013930 |
tagtggatattgcgatgaaatcatgggaaggccttgaatccatcaccattatcgctatcatcaagccgagtcgcattttttctgccattagtaagtactg |
10014029 |
T |
|
| Q |
210 |
catgattatctatgaactgaaatttactagcgacttgggcataagtgaagcatatcttgtggttcattacaccccaaatttgaagctcttgattgtttca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10014030 |
catgattatctatgaactgaaatttactagcgacttgggcataagtgaagcatatcttgtggttcattacaccccaaatttgaagctcttgattgtttca |
10014129 |
T |
|
| Q |
310 |
ttttccaacttctaatcttcgattccgatattgtgtacctttagac |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10014130 |
ttttccaacttctaatcttcgattccgatattgtgtacctttagac |
10014175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 20420600 - 20420930
Alignment:
| Q |
9 |
tattattcttgcggtaatttaatatgtgtgttttctattttgtaggacaccaaaactaaaaagattagtattgtcgtttaaaggcaaacagtccaagaat |
108 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| | |||||||| |
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| T |
20420600 |
tattagtcttgcggtaatttaatatgtgt--tttctattttgtaggacaccaaaactaaaaagattagtattgccgttcaaacgcaaactgcccaagaat |
20420697 |
T |
|
| Q |
109 |
gtagtggatattgcgatgaaatcatgggaaggccttgaatccatcaccattatcgctatcatccagccgagtcgcattttttcagccattagtaagtact |
208 |
Q |
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| ||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||||| | ||| |||||||||||||| |||||||||||||| | |
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| T |
20420698 |
gcagtagatattgcaatgaaatcaagggaaggccttgaatccatcaccattaccgctatggtaaggccaagtcgcattttttctgccattagtaagtaat |
20420797 |
T |
|
| Q |
209 |
gcatgattatctatgaactgaaatttactagcgacttgggcataagtgaagcatatcttgtggttcattacaccccaaatttgaagctcttgattgtttc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |
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| T |
20420798 |
gcatgattatctatgaactgaaatttactagcgacttgggcataagtgaagcatatcttgtggttcattacaccccaaatttgaagcttttgaatgttcc |
20420897 |
T |
|
| Q |
309 |
attttccaacttctaatcttcgattccgatatt |
341 |
Q |
| |
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|||||||||||||| ||||| ||||| |||||| |
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|
| T |
20420898 |
attttccaacttctgatctttgattctgatatt |
20420930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 10038192 - 10038489
Alignment:
| Q |
9 |
tattattcttgcggtaatttaatatgtgtgttttctattttgtaggacaccaaaactaaaaagattagtattgtcgtttaaaggcaaacagtccaagaat |
108 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||| | |||||||| |||||| ||| |
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| T |
10038192 |
tattagtcttgtggtaatttcatatgtgtgttttccattttgtaggacgccaaacctaaaaagattagtattgccgttcacaggcaaactgtccaacaat |
10038291 |
T |
|
| Q |
109 |
gtagtggatattgcgatgaaatcatgggaaggccttgaatccatcaccattatcgctatcatccagccgagtcgcattttttcagccattagtaagtact |
208 |
Q |
| |
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| ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| || || || ||||| |||| ||||| |||||||||||||| | |
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| T |
10038292 |
gcagtagatattgcgatgaaatcatgggacagccttgaatccatcaccattaccgccatggtcaagacgagttgcatcttttctgccattagtaagtatt |
10038391 |
T |
|
| Q |
209 |
gcatgattatctatgaactgaaatttactagcgacttgggcataagtgaagcatatcttgtggttcattacaccccaaatttgaagctcttgattgtt |
306 |
Q |
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|||||| ||||||||||| |||||||||| | |||| ||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
10038392 |
gcatgaccatctatgaactaaaatttactaactacttcggcataaatgatgcagatcttgtggttcaatacaccccaaatttgaagctcttgagtgtt |
10038489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 20289151 - 20288949
Alignment:
| Q |
98 |
agtccaagaatgtagtggatattgcgatgaaatcatgggaaggccttgaatccatcaccattatcgctatcatccagccgagtcgcattttttcagccat |
197 |
Q |
| |
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|||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||| | ||| || || |||||||| |||||||| ||||| |
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| T |
20289151 |
agtccaagaatgcagtagatattgcaatgaaatcatgggaaggcctttaatccatcaccataaccgccatggtcaagccgagttgcatttttattgccat |
20289052 |
T |
|
| Q |
198 |
tagtaagtactgcatgattatctatgaactgaaatttactagcgacttgggcataagtgaagcatatcttgtggttcattacaccccaaatttgaagctc |
297 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||| ||||||||||||||| |
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| T |
20289051 |
tagtaagtactacatgaagatctatgaactgaaatttactagc------ggcataagtgaagcagatcttatggttcaatacactccaaatttgaagctc |
20288958 |
T |
|
| Q |
298 |
ttgattgtt |
306 |
Q |
| |
|
|||| |||| |
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| T |
20288957 |
ttgagtgtt |
20288949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 17974887 - 17975069
Alignment:
| Q |
21 |
ggtaatttaatatgtgtgttttctattttgtaggacaccaaaactaaaaagattagtattgtcgtttaaaggcaaacagtccaagaatgtagtggatatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||| ||||| | || ||| || ||| |
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| T |
17974887 |
ggtaatttaatatgtgtgttttctattttgtaggacgtcaaatctaaaaagattagtattttcgttcaaaggcaaattgtccatgggtgcagtagaaatt |
17974986 |
T |
|
| Q |
121 |
gcgatgaaatcatgggaaggccttgaatccatcaccattatcgctatcatccagccgagtcgcattttttcagccattagtaa |
203 |
Q |
| |
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||||| ||||||| |||||||||| ||||||||||||||| ||| || ||| ||||||||||||||||| | ||||||||||| |
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|
| T |
17974987 |
gcgataaaatcattggaaggccttcaatccatcaccattaccgccatgatcaagccgagtcgcatttttcctgccattagtaa |
17975069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 17975319 - 17975137
Alignment:
| Q |
21 |
ggtaatttaatatgtgtgttttctattttgtaggacaccaaaactaaaaagattagtattgtcgtttaaaggcaaacagtccaagaatgtagtggatatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||| ||||||||| |||| | || | | || ||| |
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| T |
17975319 |
ggtaatttaatatgtgtgttttctattttgttggacatcaaatctaaaaagattagtattttcgttcaaaggcaaattctccatgggtgcactagaaatt |
17975220 |
T |
|
| Q |
121 |
gcgatgaaatcatgggaaggccttgaatccatcaccattatcgctatcatccagccgagtcgcattttttcagccattagtaa |
203 |
Q |
| |
|
|| || ||||||| |||||||||| ||||||||||||||| ||| || || ||||||||||||||||||| ||||||||||| |
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|
| T |
17975219 |
gcaataaaatcattggaaggccttcaatccatcaccattaccgccatgattaagccgagtcgcattttttctgccattagtaa |
17975137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 17953687 - 17953869
Alignment:
| Q |
21 |
ggtaatttaatatgtgtgttttctattttgtaggacaccaaaactaaaaagat--tagtattgtcgtttaaaggcaaacagtccaagaatgtagtggata |
118 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| ||||| |||||||||| ||||||| | ||| ||| |||||| |||||||||| | | || | |
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| T |
17953687 |
ggtaatttaatatttgtgtt--ctattttgtaggacgccaaatctaaaaagatattagtatttt-gttcaaatgcaaactttccaagaatgcaatagaaa |
17953783 |
T |
|
| Q |
119 |
ttgcgatgaaatcatgggaaggccttgaatccatcaccattatcgctatcatccagccgagtcgc-attttttcagccattagtaa |
203 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| |||| ||| | || ||||||||||| ||||||| ||||||||||| |
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|
| T |
17953784 |
ttgcgatgaagtcataggaaggccttgaatccatcactattaccgcattggtcaagccgagtcgcttttttttctgccattagtaa |
17953869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 17896410 - 17896363
Alignment:
| Q |
26 |
tttaatatgtgtgttttctattttgtaggacaccaaaactaaaaagat |
73 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | |||||||||| |
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|
| T |
17896410 |
tttaatatgtgtgttttctgttttgtaggacaccatatctaaaaagat |
17896363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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