View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_118 (Length: 358)
Name: NF1498_low_118
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_118 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 6939908 - 6939751
Alignment:
| Q |
17 |
caaattggagcaaaaaattattggattatttgtgtttcttatttgtaagttaagagaggaataaagtgaaatacaccctttctttataatggaactttcn |
116 |
Q |
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| T |
6939908 |
caaattggagcaaaaa-ttattggattatttgtgtttcttatttgtaagttaagagaggaataaagtgaaatacaccctttctttataatggaacttcct |
6939810 |
T |
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| Q |
117 |
nnnnnnattcaaaaataaaagaacactctttttgtttctttcccatatacaaacgttaca |
176 |
Q |
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| T |
6939809 |
ttttttattcaaaaataaaagaacactctttttgtttcttt-ctatatacaaacgttaca |
6939751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 6939671 - 6939586
Alignment:
| Q |
256 |
tataagaaattttgttttcatttcaaagtagtttggtttgtagttaaggactttcaagtacttgtttttgtacaaaaagtgaactaat |
343 |
Q |
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| T |
6939671 |
tatatgaaattttgctttcatttcaatgtagtttggtttgtgtttgagaactttcaaatacttgtttt--tacaaaaggtgaactaat |
6939586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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