View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_119 (Length: 357)
Name: NF1498_low_119
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_119 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 52971678 - 52971999
Alignment:
| Q |
19 |
ccatcatcagagaaattgttcaaattcctagatatgtatgagaccttgagggatgacgtggaacctgtcattacactcattaatgatgatggcttagagc |
118 |
Q |
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| T |
52971678 |
ccatcatcagagaaattgttcaaattcctagatatgtatgagaccttgagggatgacgtggaacctgtcattacactcattaatggtgatggtttagagc |
52971777 |
T |
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| Q |
119 |
aatgtgccaaggatttggcatacgagatgactatgacaaagcatggaataataaaggctgtcgtttcgatgttttatgatttggaaaactccatcaaggg |
218 |
Q |
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| T |
52971778 |
aatgtgccaaggatttggcatacgagatgactatgacaaagcatggaataataaaggctgtcgtttcgatgttttatgatttggaaaactccatcaaggg |
52971877 |
T |
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| Q |
219 |
tgataatgaaaggattcccgtcccatatggagcggttcatccattgactcgttatgtcatgaattatcttaaatatgcatgtgaatacaaagtgacgttg |
318 |
Q |
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| T |
52971878 |
tgataatgaaaggattcccgtcccatatggagcggttcatccattgactcgttatgtcatgaattatcttaaatatgcatgtgaatacaaagtgacgttg |
52971977 |
T |
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| Q |
319 |
gagcaagtgttttaccaatatt |
340 |
Q |
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| T |
52971978 |
gagcaagtgttttaccaatatt |
52971999 |
T |
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