View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_12 (Length: 657)
Name: NF1498_low_12
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 49 - 657
Target Start/End: Original strand, 35317147 - 35317764
Alignment:
| Q |
49 |
gaaccaaacctctctctctttcaatccataaaaacatataaccctaaagaaacacaacacaatcatgtcccttgaagactcactaagatctctttcttta |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35317147 |
gaaccaaacctctctctctttcaatccataaaaacatataaccctaaacaaacacaacacaatcatgtcccttgaagactcactaagatctctttcttta |
35317246 |
T |
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| Q |
149 |
gactacttaaaccttctcatcaacggacaagcgttcagcgacgttgttttcagcgtcgaaggacgtttagtccacgcacacagatgcatcttagcagcaa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35317247 |
gactacttaaaccttctcatcaacggacaagcgttcagcgacgttgttttcagcgtcgaaggacgtttagtccacgcacacagatgcatcttagcagcaa |
35317346 |
T |
|
| Q |
249 |
gaagtctattcttcagaaaattcttttgtgggccagacccaccttctggattagacccatcaggaaaccgagtcaacccatccggttcagctaggtctgg |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35317347 |
gaagtctattcttcagaaaattcttttgtgggccagacccaccttctggattagacccatcaggaaaccgagtcaacccatccggttcagctaggtctgg |
35317446 |
T |
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| Q |
349 |
tgttatacaagttaactctgttggatatgaggttttcttgttgatgcttcagtttctgtacagtggacaagtttctattgttcctcagaaacatgaacct |
448 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35317447 |
tgttataccagttaactctgttggatatgaggttttcttgttgatgcttcagtttctgtacagtggacaagtttctattgttcctcagaaacatgaacct |
35317546 |
T |
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| Q |
449 |
aggcctaattgtggagaccgtggttgttggcatacacattgtacttcagccgttgatcttgctcttgatactcttgcagccgctagatactttggagttg |
548 |
Q |
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| T |
35317547 |
aggcctaattgtggtgaccgtggttgttggcatacacattgtacttcagccgttgatcttgctcttgatactcttgcagccgctagatactttggagttg |
35317646 |
T |
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| Q |
549 |
aacagcttgcattactcactcaggtttttattattgtttttgccattaataagtgtagtagagaagagtaaact---------atcagcatcagcatcat |
639 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35317647 |
aacagcttgcattactcactcaggtttttattattgtttttgccattaataagtgtagtagagaagagtaaactatcagcatcatcagcatcagcatcat |
35317746 |
T |
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| Q |
640 |
catcaatcactctttctt |
657 |
Q |
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| T |
35317747 |
catcaatcactctttctt |
35317764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 7e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 398 - 576
Target Start/End: Complemental strand, 19889814 - 19889636
Alignment:
| Q |
398 |
cagtttctgtacagtggacaagtttctattgttcctcagaaacatgaacctaggcctaattgtggagaccgtggttgttggcatacacattgtacttcag |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || | || || |||||||| |||||||| |||| |
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| T |
19889814 |
cagtttctgtacagtggacaagtttctattgttcctcagaaacatgagcctagacctaattgtggtgagagagggtgctggcatacgcattgtacctcag |
19889715 |
T |
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| Q |
498 |
ccgttgatcttgctcttgatactcttgcagccgctagatactttggagttgaacagcttgcattactcactcaggtttt |
576 |
Q |
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| T |
19889714 |
ccgttgatcttgcccttgatactctagctgccgctagatactttggagttgaacagcttgcattgctcactcaggtttt |
19889636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 19890100 - 19889905
Alignment:
| Q |
112 |
catgtcccttgaagactcactaagatctctttctttagactacttaaaccttctcatcaacggacaagcgttcagcgacgttgttttcagcgtcgaagga |
211 |
Q |
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||||||||||||||| | ||||||||||| || | |||||| | || || ||||||||||| ||||| ||||||||||| |||| || ||||| |
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| T |
19890100 |
catgtcccttgaagagactctaagatctctctcccttgactacctgaatctcctcatcaacggccaagccttcagcgacgtcactttccaagttgaaggt |
19890001 |
T |
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| Q |
212 |
cgtttagtccacgcacacagatgcatcttagcagcaagaagtctattcttcagaaaattcttttgtgggccagacccaccttctggattagaccca |
307 |
Q |
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| T |
19890000 |
cgtttggttcatgctcatcgctgcatcttagcagcaaggagtcttttcttcaggaaattcttttgtgggcccgacccaccttcgggactagaccca |
19889905 |
T |
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