View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_122 (Length: 355)
Name: NF1498_low_122
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_122 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 8743931 - 8744256
Alignment:
| Q |
16 |
ataccaagcaccaataaaaactatcctttttggccagctggcaagagaaggagctctcaattatccacacggttgcaatgtaacaagatgtttgtacctg |
115 |
Q |
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| T |
8743931 |
ataccaagcaccaataaaaactatcctttttggccagctagcaagagaaggagctctcaattatccacacggttgcaatgtaacaagatgtttgtacctg |
8744030 |
T |
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| Q |
116 |
gtatgtttacaacttcaattttgtacttactaggttgtgatttgtgatatttcatggtatatagattattatcaataattgtgtaccatgttatgttatc |
215 |
Q |
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| T |
8744031 |
gtatgtttacaacttcaattttgtacttactaggttgtgatttgtgatatttcatggtatatagattattatcaataattgtgtaccatgttatgttatc |
8744130 |
T |
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| Q |
216 |
tttgatgcaggattcggagaagcaacacctgaagcaaaggctgccaaaaacctacataatttcttcacctacactgcagttaaaattgttgcttctcaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8744131 |
tttgatgcaggattcggagaagcaacacctgaagcaaaggctgccaaaaacctacataatttcttcacctacactgcagttaaaattgttgcttctcaac |
8744230 |
T |
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| Q |
316 |
ttgaggtgcctcccatctttgttgat |
341 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8744231 |
ttgaggtgcctcccatctttgttgat |
8744256 |
T |
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