View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_123 (Length: 354)

Name: NF1498_low_123
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_123
NF1498_low_123
[»] chr3 (2 HSPs)
chr3 (13-182)||(30742454-30742623)
chr3 (284-328)||(30742720-30742764)
[»] chr4 (4 HSPs)
chr4 (13-182)||(30142086-30142255)
chr4 (19-164)||(19800295-19800440)
chr4 (284-327)||(19800154-19800197)
chr4 (284-327)||(30141946-30141989)
[»] chr5 (2 HSPs)
chr5 (13-164)||(22303082-22303233)
chr5 (284-327)||(22302940-22302983)
[»] chr2 (2 HSPs)
chr2 (284-340)||(22806344-22806400)
chr2 (137-182)||(22806202-22806247)
[»] chr8 (2 HSPs)
chr8 (284-327)||(24030701-24030744)
chr8 (132-170)||(24030853-24030891)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 30742454 - 30742623
Alignment:
Q  13 aaaatgcgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcggg 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30742454 aaaatgcgattatttgactcctttgcgctcggaactgggttttggcctcaacatgaaagttgtagcatttgctcttagctttctaacacatggtcgcggg 30742553  T
Q  113 cctcaaaccgataaacgctgctccagttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 182  Q
    |||||||| |||||| ||  |||||||||| |||| |||||||||||||||| ||||| |||||||||||    
T  30742554 cctcaaactgataaatgcaactccagttataccctacgcaatgaaaggtgtcaaattattgtttattcag 30742623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 30742720 - 30742764
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatcaa 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30742720 catagcataagatagaagaaagtacattaaaaatgcactgatcaa 30742764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 30142255 - 30142086
Alignment:
Q  13 aaaatgcgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcggg 112  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  30142255 aaaacgcgattatttgactcctttgtgctcggaactgggttctgtcctcaacatgaaagttgtagcattttctcttagctttccaacgcatggtcgcggg 30142156  T
Q  113 cctcaaaccgataaacgctgctccagttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 182  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  30142155 cctcaaaccgataaacacagctccagttatgccctgcacaatgaaagatgtcaaattactgtttattcag 30142086  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 19800440 - 19800295
Alignment:
Q  19 cgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaa 118  Q
    |||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||| ||| |||| |||||||||||||| | ||||||||||||||||||    
T  19800440 cgattacttgactcctttgcactccgaactgggttctgtcctcaacatgaaagttctagaattttctcttagctttccagcgcatggtcgcgggcctcaa 19800341  T
Q  119 accgataaacgctgctccagttatgccctgcgcaatgaaaggtgtc 164  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||    
T  19800340 accgataaacggagctccagttatgccctgcgtaatgaaaggtgtc 19800295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 19800197 - 19800154
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatca 327  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  19800197 catagcataagatggaagaaagtacattaaaaatgcactgatca 19800154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 30141989 - 30141946
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatca 327  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  30141989 cataacataagatagaagaaagtacattaaaaatgcactgatca 30141946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 22303233 - 22303082
Alignment:
Q  13 aaaatgcgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcggg 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| | |||    
T  22303233 aaaacgcgattatttgactcctttgcgctcggaactgggttctgtcctcaacatgaaagttgtagcattttctcttagctttccaacgcatggttgtggg 22303134  T
Q  113 cctcaaaccgataaacgctgctccagttatgccctgcgcaatgaaaggtgtc 164  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  22303133 cctcaaaacgataaacgcagctccagttatgccctgcgcaatgaaaggtgtc 22303082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 22302983 - 22302940
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatca 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22302983 catagcataagatagaagaaagtacattaaaaatgcactgatca 22302940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 22806344 - 22806400
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatcaaattcccccacac 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22806344 catagcataagatagaagaaagtacattaaaaatgcactgatcaaattcccccacac 22806400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 22806202 - 22806247
Alignment:
Q  137 agttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 182  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  22806202 agttatggcctgcgcaatgaaaggtgtccaattactgtttattcag 22806247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 24030744 - 24030701
Alignment:
Q  284 catagcataagatagaagaaagtacattaaaaatgcactgatca 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24030744 catagcataagatagaagaaagtacattaaaaatgcactgatca 24030701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 24030891 - 24030853
Alignment:
Q  132 gctccagttatgccctgcgcaatgaaaggtgtccaatta 170  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  24030891 gctcgagttatgccctgcgcaatgaaaggtgtcaaatta 24030853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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