View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_125 (Length: 353)
Name: NF1498_low_125
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_125 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 75 - 339
Target Start/End: Original strand, 41809749 - 41810013
Alignment:
| Q |
75 |
gaagagaggttgtagcaatcttgttcttggagattaacagattcagaagagaagatacaaggaaaactgttacaatatttaaggtacttaattattccaa |
174 |
Q |
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| T |
41809749 |
gaagagaggttttagcaatcttgttcttggagattaacagattcagaagagaagatacaaggaaaactgttacaatatttaaggtacttaattattccaa |
41809848 |
T |
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| Q |
175 |
tttaccaattattgtatgaatattcaaaatcgattttagggtatgtgttctcctttttcttcttctttgggtagtagtattattacatagnnnnnnnnnn |
274 |
Q |
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| T |
41809849 |
tttaccaattattgtatgaatattcaaaatcgattttagggtatgtgttctcctttttcttcttctttgggtagtagtattattacatagttttttattt |
41809948 |
T |
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| Q |
275 |
nnnnnaaattcttgaaagattcatgaaattgttgttaaaattagaagttattgatgcttgttagt |
339 |
Q |
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| T |
41809949 |
tttttaaattcttgaaagattcatgaaattgttgtcaaaattagaagttattgatgcttgttagt |
41810013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 37700631 - 37700673
Alignment:
| Q |
89 |
gcaatcttgttcttggagattaacagattcagaagagaagata |
131 |
Q |
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| T |
37700631 |
gcaatcttgttcttggagcttaacatattcagaagagaagata |
37700673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 41793457 - 41793547
Alignment:
| Q |
89 |
gcaatcttgttcttggagattaacagattcagaagagaagatacaaggaaaac-tgttacaatatttaaggtacttaattattccaatttaccaa |
182 |
Q |
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| T |
41793457 |
gcaatattgttgttagagcttaacagattcagaaaagaggatataaggaaaacttgaagcaatatttaaggtac----ttattccaatttaccaa |
41793547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 41736123 - 41736157
Alignment:
| Q |
24 |
agtttaagtatttctatatatagttggtgagagag |
58 |
Q |
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| T |
41736123 |
agtttaagtatttctatatatagttggtgagagag |
41736157 |
T |
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