View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_127 (Length: 351)

Name: NF1498_low_127
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_127
NF1498_low_127
[»] chr2 (3 HSPs)
chr2 (1-97)||(17984657-17984753)
chr2 (1-97)||(17980863-17980958)
chr2 (253-331)||(17984238-17984316)
[»] chr5 (1 HSPs)
chr5 (25-97)||(29830777-29830849)
[»] chr1 (2 HSPs)
chr1 (1-94)||(15851305-15851397)
chr1 (1-94)||(25380714-25380809)
[»] chr8 (1 HSPs)
chr8 (217-254)||(26537969-26538006)
[»] chr7 (1 HSPs)
chr7 (217-253)||(5031921-5031957)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17984753 - 17984657
Alignment:
Q  1 aaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctcacac 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  17984753 aaaagtaataagactatgtaataataataagattcactaagaattggtagattcaaagtcaaatcttaatacaatccatgattgataattctcacac 17984657  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17980958 - 17980863
Alignment:
Q  1 aaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctcacac 97  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  17980958 aaaagtaataagactatgtaataata-taagattcactaagaattggtagattcaaagtcaaatcttaataaaatccatgattgataattctcacac 17980863  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 17984316 - 17984238
Alignment:
Q  253 aataaaatttatgacataaaataaataacttgaatggataaataaaagagattcaattcaaagaggagaatccacctta 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  17984316 aataaaatttatgacataaaataaataacttgaatggataaataaaagagattcagttcaaagaggagaattcacctta 17984238  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 29830777 - 29830849
Alignment:
Q  25 taataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctcacac 97  Q
    ||||||||||||||||||||||  | ||||||||||||||||||| |||||| |  |||||||||||||||||    
T  29830777 taataagattcactaagaattgagagattcaaagtcaaatcttaacacaatctattattgataattctcacac 29830849  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 15851305 - 15851397
Alignment:
Q  1 aaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctca 94  Q
    |||||||||||||||||||| |||||||||||| || |||| ||||  | |||||| || ||||||||| |||||  | |||||||||||||||    
T  15851305 aaaagtaataagactatgtagtaataataagatccaataag-attgagagattcaatgtaaaatcttaacacaatttaagattgataattctca 15851397  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 25380809 - 25380714
Alignment:
Q  1 aaaagtaataagactatgtaataataataagattcacta--agaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctca 94  Q
    |||||||||||||| ||| |||||||||||||||| |||  |||||||    |||||| ||||||| ||||| |||||    ||||||||||||||    
T  25380809 aaaagtaataagaccatgcaataataataagattcgctaggagaattgagtgattcaatgtcaaatattaatgcaatctgttattgataattctca 25380714  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 26538006 - 26537969
Alignment:
Q  217 tgacatatattacatggggtaaagcaccattatcccaa 254  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  26538006 tgacatatattacaaggggtaaagcaccattaacccaa 26537969  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 5031957 - 5031921
Alignment:
Q  217 tgacatatattacatggggtaaagcaccattatccca 253  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  5031957 tgacatatattacagggggtaaagcaccattaaccca 5031921  T

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