View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_129 (Length: 347)
Name: NF1498_low_129
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_129 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 43863018 - 43862705
Alignment:
| Q |
11 |
attatacttatgaataattgggagtcagtcaggatgtgcacggtccaataattttttacgtgtatcatccacaaccattactatgctctcaaatttcaat |
110 |
Q |
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| T |
43863018 |
attatacttatgaataattgg-agtaagtcaggatatgcacgatccaataattttttacgtgtatcatccacaaccattactatgctctcaaatttcaat |
43862920 |
T |
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| Q |
111 |
attcaattgagtgttaatttcgacttgttt-nnnnnnntgttagtttcaattttcaacgataaatagtagacttagactactggttgtagtttccaactt |
209 |
Q |
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| T |
43862919 |
attcaattgagtgttaatttcgacttgtttaaaaaaaatgttagtttcaattttcaacgataaatagtagacttagactactagttgtagtttccaactt |
43862820 |
T |
|
| Q |
210 |
cannnnnnnnnnnnnnnnnnnnnaacctaactttggtgatatgaggtttacatcgttcacgtacattctacatcagtcacttgtgcacattctaatggtt |
309 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43862819 |
catttttgttttgttgattttttaacctaactttggtgatatgaggtttacatcgttcacgtacattctacatcagtcacttgtgcacattctaatggtt |
43862720 |
T |
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| Q |
310 |
gttaattacgttgat |
324 |
Q |
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|||||||| |||||| |
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| T |
43862719 |
gttaattatgttgat |
43862705 |
T |
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