View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_132 (Length: 346)

Name: NF1498_low_132
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_132
NF1498_low_132
[»] chr7 (9 HSPs)
chr7 (227-338)||(25483918-25484026)
chr7 (118-194)||(25483809-25483885)
chr7 (18-92)||(21920733-21920807)
chr7 (55-102)||(25483705-25483751)
chr7 (18-92)||(30582759-30582834)
chr7 (18-92)||(40061251-40061326)
chr7 (41-99)||(46534521-46534579)
chr7 (40-94)||(47403115-47403169)
chr7 (42-90)||(47869330-47869378)
[»] chr2 (4 HSPs)
chr2 (18-92)||(44525923-44525998)
chr2 (18-92)||(6432258-6432333)
chr2 (18-92)||(40862140-40862215)
chr2 (255-306)||(5139963-5140015)
[»] chr3 (7 HSPs)
chr3 (41-99)||(6124823-6124881)
chr3 (53-99)||(42527985-42528031)
chr3 (40-99)||(44895995-44896054)
chr3 (18-92)||(46668429-46668504)
chr3 (53-99)||(43968281-43968327)
chr3 (31-99)||(51980833-51980901)
chr3 (52-92)||(52959414-52959454)
[»] chr1 (8 HSPs)
chr1 (53-99)||(2459575-2459621)
chr1 (40-92)||(30899358-30899410)
chr1 (40-92)||(50940134-50940186)
chr1 (52-99)||(31656316-31656363)
chr1 (41-99)||(11332954-11333012)
chr1 (41-99)||(11490975-11491033)
chr1 (53-99)||(38058873-38058919)
chr1 (21-92)||(31496701-31496773)
[»] chr8 (4 HSPs)
chr8 (18-92)||(18146430-18146505)
chr8 (18-92)||(41356378-41356453)
chr8 (53-99)||(2773512-2773558)
chr8 (18-82)||(41669734-41669799)
[»] chr5 (2 HSPs)
chr5 (18-92)||(7948374-7948449)
chr5 (255-307)||(30892243-30892296)
[»] chr4 (3 HSPs)
chr4 (255-307)||(37306398-37306451)
chr4 (21-92)||(20530797-20530869)
chr4 (40-80)||(48953141-48953181)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 25483918 - 25484026
Alignment:
Q  227 attcttaatcctcataaataagtctgttagagtgagtgttagatagagtattaaaggagagtgttcctagcatttctcttgttgttgttttgttttaagt 326  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||   |||||||||||||||||||    
T  25483918 attcttaatcctcataaataagtctcttagagtgagtgttaaatagagtattaaaggagagtgttcttagcatttctc---ttgttgttttgttttaagt 25484014  T
Q  327 catagtataata 338  Q
    ||||||||||||    
T  25484015 catagtataata 25484026  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 25483809 - 25483885
Alignment:
Q  118 aacccaacaaacgatcactcccacagcaggtcaatgctctaagacctcacaaaagagggagatgccacatataccac 194  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483809 aacccaacaaacaatctctcccacagcaggtcaatgctctaagacctcacaaaagagggagatgccacatataccac 25483885  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 21920807 - 21920733
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||| ||| ||||||||  ||||||||| | ||||||||||||||||||| ||||||||| | |||||||||    
T  21920807 agcttttctcatgagcttatagcgttttttaaaa-actatttcaagtagctttttagcttatagctgatagctttt 21920733  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 25483705 - 25483751
Alignment:
Q  55 atttcaagtagcttttaagcttatagtttatagcttttcacatttatc 102  Q
    ||||||||||| |||| ||||||||||||||||| |||||||||||||    
T  25483705 atttcaagtagtttttgagcttatagtttatagc-tttcacatttatc 25483751  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 30582759 - 30582834
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||| || |||||||||  |||||||||||  ||| | |||||||||||| |||||||||||| ||||||||    
T  30582759 agcttttctcactagcttatagcgttttttaagaagctaatccaagtagctttttagcttatagtttgtagctttt 30582834  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 40061251 - 40061326
Alignment:
Q  18 agcttttcacattagcttata-tgttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||| || ||||||||| ||||||||||||  ||| | |||||||||||| ||||||||| || ||||||||    
T  40061251 agcttttctcactagcttatagtgttttttaagaagctaatccaagtagctttttagcttatagcttgtagctttt 40061326  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 46534521 - 46534579
Alignment:
Q  41 ttttttaagagactatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    |||||| ||| || ||||||||||| |||| ||||||||||| ||||||||| ||||||    
T  46534521 tttttttagaaaccatttcaagtagttttttagcttatagttgatagcttttaacattt 46534579  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 47403169 - 47403115
Alignment:
Q  40 gttttttaagagactatttcaagtagcttttaagcttatagtttatagcttttca 94  Q
    ||||||| |||  ||||||||||| |||||| ||||||||||||||||| |||||    
T  47403169 gttttttgagaagctatttcaagtggcttttgagcttatagtttatagcatttca 47403115  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 47869378 - 47869330
Alignment:
Q  42 tttttaagagactatttcaagtagcttttaagcttatagtttatagctt 90  Q
    ||||| |||| ||||||||| |||||||||||||||||  |||||||||    
T  47869378 tttttgagaggctatttcaaatagcttttaagcttataacttatagctt 47869330  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 44525998 - 44525923
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||  ||||||||||||  ||||||| |||  |||||||||||||||||| ||||||||| |||||||||||    
T  44525998 agcttttttcattagcttatagcgttttttgagaagctatttcaagtagcttttgagcttatagcttatagctttt 44525923  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 6432258 - 6432333
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||| ||| ||||||||  ||||||| | | ||||||||||||||||||| ||||||||| | |||||||||    
T  6432258 agcttttctcatgagcttataacgttttttgaaaaactatttcaagtagctttttagcttatagctgatagctttt 6432333  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 40862215 - 40862140
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||| || |||||||||  |||||||||||  ||| | |||||||||||| |||||||||||| ||||||||    
T  40862215 agcttttctcactagcttatagcgttttttaagaagctaatccaagtagctttttagcttatagtttgtagctttt 40862140  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 5140015 - 5139963
Alignment:
Q  255 agagtgagtgttagatagagtatta-aaggagagtgttcctagcatttctctt 306  Q
    ||||||||||||||| |||||  || || ||||||||||||||||||||||||    
T  5140015 agagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctctt 5139963  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 6124823 - 6124881
Alignment:
Q  41 ttttttaagagactatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    |||||||||| | |||||||| |||||||| ||||||||| | ||||||||||||||||    
T  6124823 ttttttaagaaattatttcaaatagctttttagcttatagctgatagcttttcacattt 6124881  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 42528031 - 42527985
Alignment:
Q  53 ctatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  42528031 ctatttcaagtagctttttagcttatagctgatagcttttcacattt 42527985  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 44896054 - 44895995
Alignment:
Q  40 gttttttaagagactatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    |||||||||||  ||| |||||||||||||| ||||||||| || |||||||||| ||||    
T  44896054 gttttttaagaagctaattcaagtagcttttgagcttatagcttgtagcttttcatattt 44895995  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 46668429 - 46668504
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    ||||||||||| |||||||||  |||||||||||  ||| | |||||||||||| ||||||||| || ||||||||    
T  46668429 agcttttcacactagcttatagcgttttttaagaagctaatccaagtagctttttagcttatagcttgtagctttt 46668504  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 43968327 - 43968281
Alignment:
Q  53 ctatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    |||||||||||||||||| ||||| ||| ||||||||||||| ||||    
T  43968327 ctatttcaagtagcttttgagcttgtagcttatagcttttcatattt 43968281  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 51980833 - 51980901
Alignment:
Q  31 agcttatatgttttttaagagactatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    ||||||||  |||||| |||  |||||||||||||||||| | ||||||| | ||||||||| ||||||    
T  51980833 agcttatagcttttttcagaagctatttcaagtagctttttaacttatagctgatagctttttacattt 51980901  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 52959414 - 52959454
Alignment:
Q  52 actatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    ||||||||||||||||||| | |||||||||||||| ||||    
T  52959414 actatttcaagtagctttttaacttatagtttatagttttt 52959454  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 2459621 - 2459575
Alignment:
Q  53 ctatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  2459621 ctatttcaagtagctttttagcttatagctgatagcttttcacattt 2459575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 30899410 - 30899358
Alignment:
Q  40 gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||||||  ||| |||||||||||||| ||||||||| |||||||||||    
T  30899410 gttttttaagaagctaattcaagtagctttttagcttatagcttatagctttt 30899358  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 50940186 - 50940134
Alignment:
Q  40 gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    ||||||| ||| ||||||||||||||||||| ||||||||  |||||||||||    
T  50940186 gttttttgagaaactatttcaagtagcttttgagcttataacttatagctttt 50940134  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 31656363 - 31656316
Alignment:
Q  52 actatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    ||||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  31656363 actatttcaagtagctttttagcttatagctgatagctttttacattt 31656316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 11332954 - 11333012
Alignment:
Q  41 ttttttaagagactatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    ||||||||||  |||||||||||||||||| ||||||||| | || |||||| ||||||    
T  11332954 ttttttaagaagctatttcaagtagctttttagcttatagctaattgctttttacattt 11333012  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 11490975 - 11491033
Alignment:
Q  41 ttttttaagagactatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    ||||||||||  |||||||||||||||||| ||||||||| | || |||||| ||||||    
T  11490975 ttttttaagaagctatttcaagtagctttttagcttatagctaattgctttttacattt 11491033  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 38058873 - 38058919
Alignment:
Q  53 ctatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    ||||||||| |||||||| ||||||||| | ||||||||||||||||    
T  38058873 ctatttcaaatagctttttagcttatagctgatagcttttcacattt 38058919  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 31496701 - 31496773
Alignment:
Q  21 ttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    ||||| ||||||||||||| ||||||| | |  ||| |||||||||||||| ||||||||| || ||||||||    
T  31496701 ttttctcattagcttatatcgttttttgaaaagctaattcaagtagcttttgagcttatagcttgtagctttt 31496773  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 18146430 - 18146505
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||| || |||||||||  |||||||||||  ||| | |||||||||||| |||||||||||| ||||||||    
T  18146430 agcttttctcactagcttatagcgttttttaagaagctaatccaagtagctttttagcttatagtttgtagctttt 18146505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 41356378 - 41356453
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||| |||| |||||||  ||||||||||| |||| | |||||||||||| ||||||||| || ||||||||    
T  41356378 agcttttctcattggcttatagcgttttttaagaaactaatccaagtagctttttagcttatagcttgtagctttt 41356453  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 2773558 - 2773512
Alignment:
Q  53 ctatttcaagtagcttttaagcttatagtttatagcttttcacattt 99  Q
    |||||||||||||||||| ||||||||| | ||||||||| ||||||    
T  2773558 ctatttcaagtagctttttagcttatagctgatagctttttacattt 2773512  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 41669734 - 41669799
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtt 82  Q
    |||||||| || |||||||||  ||||||| |||  |||||||||||||||||| |||||||||||    
T  41669734 agcttttctcactagcttataacgttttttgagaagctatttcaagtagcttttgagcttatagtt 41669799  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 7948449 - 7948374
Alignment:
Q  18 agcttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    |||||||| ||||||||||||  |||||||||||  ||| | |||||||||||| ||||||||| || ||||||||    
T  7948449 agcttttctcattagcttatagcgttttttaagaagctaatccaagtagctttttagcttatagcttgtagctttt 7948374  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 30892243 - 30892296
Alignment:
Q  255 agagtgagtgttagatagagtatta-aaggagagtgttcctagcatttctcttg 307  Q
    ||||||||||||||| |||||  || || |||||||||||||||||||||||||    
T  30892243 agagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctcttg 30892296  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 37306451 - 37306398
Alignment:
Q  255 agagtgagtgttagatagagtatta-aaggagagtgttcctagcatttctcttg 307  Q
    ||||||||||||||| |||||  || || |||||||||||||||||||||||||    
T  37306451 agagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctcttg 37306398  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 20530869 - 20530797
Alignment:
Q  21 ttttcacattagcttatat-gttttttaagagactatttcaagtagcttttaagcttatagtttatagctttt 92  Q
    ||||||||||||||| ||  ||||||| |||   |||| |||||||||||| ||||||||| |||||||||||    
T  20530869 ttttcacattagcttgtagcgttttttgagaagttattccaagtagcttttgagcttatagcttatagctttt 20530797  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 48953141 - 48953181
Alignment:
Q  40 gttttttaagagactatttcaagtagcttttaagcttatag 80  Q
    |||||||||||  |||||||||||||||||| |||||||||    
T  48953141 gttttttaagaagctatttcaagtagcttttgagcttatag 48953181  T

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