View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_138 (Length: 337)
Name: NF1498_low_138
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_138 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 24 - 318
Target Start/End: Original strand, 25089527 - 25089820
Alignment:
| Q |
24 |
attcttccaactgctccgccatgtctctgcctgagccacgccgtatgaaatccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagat |
123 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
25089527 |
attcttccaactgctccgccatgtctctgcctcagccacgccgtgtggactccaaaatatggcaaatacgcgctggacctgctgtcaagattccgaagat |
25089626 |
T |
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| Q |
124 |
tggctcaaaagtctactacttcccacaaggtcacttggaacatgctagtccatcccctaacattgaaacacagctccaatctatgtcttcgccttccatc |
223 |
Q |
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|||||||||||||||||||||| || |||| ||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||||| |||||| |
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| T |
25089627 |
tggctcaaaagtctactacttctcagaaggccacttggaacatgcttgttcatcccctaacattgaaacagagctcc-ttctatgtcttcgccctccatc |
25089725 |
T |
|
| Q |
224 |
cgttctatgtatcatctcatctattgatcttctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaacaactgatg |
318 |
Q |
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|||||| || |||||||||||| ||||||||||||| ||| ||||||||||||||| || || ||||||||||| ||||||||||||||||||| |
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| T |
25089726 |
cgttctctgcatcatctcatctgttgatcttctggcaaatcttcacaccgatgaagtctttgcgaaactgctccttactccggtaacaactgatg |
25089820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 24 - 318
Target Start/End: Original strand, 25147497 - 25147790
Alignment:
| Q |
24 |
attcttccaactgctccgccatgtctctgcctgagccacgccgtatgaaatccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagat |
123 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
25147497 |
attcttccaactgctccgccatgtctctgcctcagccacgccgtgtggactccaaaatatggcaaatacgcgctggacctgctgtcaagattccgaagat |
25147596 |
T |
|
| Q |
124 |
tggctcaaaagtctactacttcccacaaggtcacttggaacatgctagtccatcccctaacattgaaacacagctccaatctatgtcttcgccttccatc |
223 |
Q |
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|||||||||||||||||||||| || |||| ||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||||| |||||| |
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| T |
25147597 |
tggctcaaaagtctactacttctcagaaggccacttggaacatgcttgttcatcccctaacattgaaacagagctcc-ttctatgtcttcgccctccatc |
25147695 |
T |
|
| Q |
224 |
cgttctatgtatcatctcatctattgatcttctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaacaactgatg |
318 |
Q |
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|||||| || |||||||||||| ||||||||||||| ||| ||||||||||||||| || || ||||||||||| ||||||||||||||||||| |
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| T |
25147696 |
cgttctctgcatcatctcatctgttgatcttctggcaaatcttcacaccgatgaagtctttgcgaaactgctccttactccggtaacaactgatg |
25147790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 25728505 - 25728373
Alignment:
| Q |
36 |
gctccgccatgtctctgcctgagccacgccgtatgaaatccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagt |
135 |
Q |
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|||||||||||||||| ||| ||||| ||| || | ||||||||||||| ||||||||||| || | ||||||||||| |||||| ||| ||||| |
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| T |
25728505 |
gctccgccatgtctcttcctctgccacctcgtgtggaccccaaaatatggcagatatgcgccggccccgacgtcaagattccaaagattcactctaaagt |
25728406 |
T |
|
| Q |
136 |
ctactacttcccacaaggtcacttggaacatgc |
168 |
Q |
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||||||||||||| |||||| |||||||||| |
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| T |
25728405 |
ttactacttcccacgaggtcatctggaacatgc |
25728373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 25224782 - 25224875
Alignment:
| Q |
75 |
ccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgc |
168 |
Q |
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||||||||||||| ||||||| || || | |||||||||||||||||| ||| ||||| ||||||||||||| |||||| |||||||||| |
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| T |
25224782 |
ccaaaatatggcagatatgcgttggccccgacgtcaagattccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgc |
25224875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 25288938 - 25289031
Alignment:
| Q |
75 |
ccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgc |
168 |
Q |
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|
||||||||||||| ||||||| || || | |||||||||||||||||| ||| ||||| ||||||||||||| |||||| |||||||||| |
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| T |
25288938 |
ccaaaatatggcagatatgcgttggccccgacgtcaagattccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgc |
25289031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 26099296 - 26099248
Alignment:
| Q |
261 |
gatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaa |
309 |
Q |
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||||||||||| |||||||| || |||||||||||||||||||| |||| |
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| T |
26099296 |
gatcctcacacagatgaagtctttgccaaactgctcctcactcccgtaa |
26099248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 25443754 - 25443691
Alignment:
| Q |
247 |
ttgatcttctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaac |
310 |
Q |
| |
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||||||| || || ||||||||||||||||| || ||||||||| |||| |||| ||||||||| |
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| T |
25443754 |
ttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgctactcagtccggtaac |
25443691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 25618083 - 25618133
Alignment:
| Q |
261 |
gatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaaca |
311 |
Q |
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|||||| |||| |||||||| ||||||||||||||||||||||| |||||| |
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| T |
25618083 |
gatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaaca |
25618133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 25617936 - 25617992
Alignment:
| Q |
113 |
attccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgct |
169 |
Q |
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||||||||| || ||| |||||||||||||| ||| |||||||||| ||||||||| |
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| T |
25617936 |
attccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatgct |
25617992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 560760 - 560839
Alignment:
| Q |
231 |
tgtatcatctcatctattgatcttctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaac |
310 |
Q |
| |
|
||||||||||| || ||||||| || || ||||||||||| ||||| || ||||| |||||||| |||||||| ||||| |
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| T |
560760 |
tgtatcatctccgctgttgatctcctcgccgatcctcacactgatgaggtcttcgctaaactgctgctcactcctgtaac |
560839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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