View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_14 (Length: 651)

Name: NF1498_low_14
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_14
NF1498_low_14
[»] chr8 (6 HSPs)
chr8 (354-635)||(3235619-3235900)
chr8 (12-290)||(3235964-3236244)
chr8 (482-635)||(3233034-3233178)
chr8 (381-533)||(3233157-3233303)
chr8 (222-255)||(32535489-32535522)
chr8 (227-255)||(20692887-20692915)
[»] chr4 (2 HSPs)
chr4 (228-268)||(19470146-19470186)
chr4 (212-252)||(34257427-34257467)
[»] chr3 (4 HSPs)
chr3 (212-268)||(34881087-34881142)
chr3 (212-268)||(40700599-40700654)
chr3 (227-267)||(46612907-46612947)
chr3 (212-255)||(34881362-34881404)
[»] chr7 (1 HSPs)
chr7 (205-268)||(39734699-39734761)
[»] chr1 (2 HSPs)
chr1 (228-266)||(8098183-8098221)
chr1 (222-266)||(15873798-15873842)
[»] chr2 (3 HSPs)
chr2 (219-268)||(2579084-2579133)
chr2 (219-268)||(37519586-37519635)
chr2 (227-267)||(15997486-15997526)
[»] chr5 (1 HSPs)
chr5 (215-255)||(1410985-1411025)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-157; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 354 - 635
Target Start/End: Complemental strand, 3235900 - 3235619
Alignment:
Q  354 ccaatggatgattatgctttagtataattgatatttcaaacattattccaacacttgcaacctcaaaaaacaattttttagatatcaagttgtacagatt 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3235900 ccaatggatgattatgctttagtataattgatatttcaaacattattccaacacttgcaacctcaaaaaacaattttttagatatcaagttgtacagatt 3235801  T
Q  454 tttaagtttgtacgagatatacttaataaaagttaaatacattaggatctattgagttatagttaaatacattaggatctgctgactgagggttattatt 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3235800 tttaagtttgtacgagatatacttaataaaagttaaatacattaggatctattgagttatagttaaatacattaggatctgctgactgagggttattatt 3235701  T
Q  554 tagtaaagaagagacacaagaatcccaaacttttgcactccttttcaatattgaagttttgctcttcctaaaatcttctgat 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3235700 tagtaaagaagagacacaagaatcccaaacttttgcactccttttcaatattgaagttttgctcttcctaaaatcttctgat 3235619  T

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Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 3236244 - 3235964
Alignment:
Q  12 attctaattgtttgttgatgtttaaggtggtggattatgttggcgctctattcattcattatgtgaggaatgaggtggttcttgagacggaaaatgaggt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3236244 attctaattgtttgttgatgtttaaggtggtggattatgttggcgctctattcattcattatgcgaggaatgaggtggttcttgagacggaaaatgaggt 3236145  T
Q  112 at--tatcttatgtcaagtatcgccctgaagtgagatgtctcttaaggcggtgaagggggtaagttgtgctacaccatgttatttattgaggttgcaagt 209  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3236144 atattatcttatgtcaagtatcgccctgaagtgagatgtctcttaaggcggtgaaggaggtaagttgtgctacaccatgttatttattgaggttgcaagt 3236045  T
Q  210 tatggcaaggagaaaatctaacataacaattaacatattaacattttttattgaaaaaacatcctttaaatccatgagatg 290  Q
    | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  3236044 tttgacaaggagaaaatctaacataacaattaacatattaatattttttattgaaaaaacaccctttaattccatgagatg 3235964  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 635
Target Start/End: Complemental strand, 3233178 - 3233034
Alignment:
Q  482 aaagttaaatacattaggatctattgagttatagttaaatacattaggatctgctgactgagggttattatttagtaaagaagagacacaagaatcccaa 581  Q
    |||||||||||||||||||||||||||||||      ||||||| ||||||||||    ||||| ||||   ||||||||||||||||||||||||||||    
T  3233178 aaagttaaatacattaggatctattgagtta------aatacataaggatctgctacaggagggatatt---tagtaaagaagagacacaagaatcccaa 3233088  T
Q  582 acttttgcactccttttcaatattgaagttttgctcttcctaaaatcttctgat 635  Q
    |||||   |||||||| ||| |||||||||||  ||||| | |||| |||||||    
T  3233087 actttccaactcctttccaaaattgaagtttttttcttcttgaaattttctgat 3233034  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 533
Target Start/End: Complemental strand, 3233303 - 3233157
Alignment:
Q  381 ttgatatttcaaacattattccaacacttgcaacctcaaaaaa-caattttttagatatcaagttgtacagatttttaagtttgtacgagatatacttaa 479  Q
    |||||||| ||||||| ||||||||||||||| | | |||||| |||||| |||||||||||||||||||   |||||| |||| |||||  |||| |||    
T  3233303 ttgatattccaaacataattccaacacttgcagcataaaaaaaacaatttattagatatcaagttgtacaatcttttaaatttgcacgag--atacctaa 3233206  T
Q  480 taaaagttaaatacattaggatctattgagttatagttaaatacattaggatct 533  Q
    | |||||||||     || |||| | || |||| ||||||||||||||||||||    
T  3233205 ttaaagttaaa-----tatgatcgaatgggttaaagttaaatacattaggatct 3233157  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 32535489 - 32535522
Alignment:
Q  222 aaaatctaacataacaattaacatattaacattt 255  Q
    |||| |||||||||||||||||||||||||||||    
T  32535489 aaaagctaacataacaattaacatattaacattt 32535522  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 20692887 - 20692915
Alignment:
Q  227 ctaacataacaattaacatattaacattt 255  Q
    |||||||||||||||||||||||||||||    
T  20692887 ctaacataacaattaacatattaacattt 20692915  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 19470186 - 19470146
Alignment:
Q  228 taacataacaattaacatattaacattttttattgaaaaaa 268  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  19470186 taacataacaattaacatattaatattttttattaaaaaaa 19470146  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 34257427 - 34257467
Alignment:
Q  212 tggcaaggagaaaatctaacataacaattaacatattaaca 252  Q
    |||||||||||||| ||| |||||||||||||||| |||||    
T  34257427 tggcaaggagaaaaactagcataacaattaacataataaca 34257467  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 34881087 - 34881142
Alignment:
Q  212 tggcaaggagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 268  Q
    |||||||||||||| |||||| |||||||||||||||||||||| | ||| ||||||    
T  34881087 tggcaaggagaaaa-ctaacaaaacaattaacatattaacatttgtcattaaaaaaa 34881142  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 40700654 - 40700599
Alignment:
Q  212 tggcaaggagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 268  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| | ||| ||||||    
T  40700654 tggcaagaagaaaat-taacataacaattaacatattaacatttgtgattcaaaaaa 40700599  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 46612947 - 46612907
Alignment:
Q  227 ctaacataacaattaacatattaacattttttattgaaaaa 267  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  46612947 ctaacataacaattaacatattaacatttgttattaaaaaa 46612907  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 34881362 - 34881404
Alignment:
Q  212 tggcaaggagaaaatctaacataacaattaacatattaacattt 255  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  34881362 tggcaaggagaaaa-ctaacaaaacaattaacatattaacattt 34881404  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 39734761 - 39734699
Alignment:
Q  205 caagttatggcaaggagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 268  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||| ||||||  |||| ||||||    
T  39734761 caagtcatggcaaggagaaaa-ctaacattacaattaacatattcacatttgctattaaaaaaa 39734699  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 8098221 - 8098183
Alignment:
Q  228 taacataacaattaacatattaacattttttattgaaaa 266  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  8098221 taacataacaattaacatactaacatttattattgaaaa 8098183  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 15873798 - 15873842
Alignment:
Q  222 aaaatctaacataacaattaacatattaacattttttattgaaaa 266  Q
    |||| |||||||||||||||||||| |||||||| ||||| ||||    
T  15873798 aaaaactaacataacaattaacatactaacatttgttattaaaaa 15873842  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 2579084 - 2579133
Alignment:
Q  219 gagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 268  Q
    ||||||| ||||||||||||||| |||| |||||||| | ||||||||||    
T  2579084 gagaaaaactaacataacaattagcatactaacatttatcattgaaaaaa 2579133  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 37519586 - 37519635
Alignment:
Q  219 gagaaaatctaacataacaattaacatattaacattttttattgaaaaaa 268  Q
    ||||||| |||||||||||||||||||||||| |||| | ||| ||||||    
T  37519586 gagaaaaactaacataacaattaacatattaatatttgtcatttaaaaaa 37519635  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 15997486 - 15997526
Alignment:
Q  227 ctaacataacaattaacatattaacattttttattgaaaaa 267  Q
    |||||||||||||||||||| |||||||||| ||| |||||    
T  15997486 ctaacataacaattaacatactaacatttttcattaaaaaa 15997526  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 1410985 - 1411025
Alignment:
Q  215 caaggagaaaatctaacataacaattaacatattaacattt 255  Q
    |||| |||||| ||||||||| |||||||||||||||||||    
T  1410985 caagaagaaaaactaacataataattaacatattaacattt 1411025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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