View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_low_140 (Length: 334)
Name: NF1498_low_140
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_140 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 17774924 - 17775237
Alignment:
| Q |
1 |
ccacgtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatgaaatcacattgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17774924 |
ccacgtaccatcaactccttacaacgaataacatcaagcttaacgactctttcgagctccacattccaactcaaacatagtgaatgaaatcacattgagt |
17775023 |
T |
|
| Q |
101 |
acatgaccatttctagccatacagtctcaattcaatcgtgaagcatcgaaacaaattaaagcacaaccacaaattattcaaaagaagtgtctgagtacaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
17775024 |
acataaccatttctagccatacagtctcaattcaatcatgaagcattgaaacaaattaaagcacaaccccaaattattcaaaagaagtgttggagtacaa |
17775123 |
T |
|
| Q |
201 |
attggatttgaaactggatctgtaacacgaaactggatccgatggatctcactcaaaagggtttgagagagctatggtgaacccaaaagaacaccgtttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17775124 |
attggatttgaaactggatctgtaacacgaaaccggatccgatggatctcactcaaaagggtttgagagagctatggtgaacccaaaagaacaccatttg |
17775223 |
T |
|
| Q |
301 |
tgctgttgacggcg |
314 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
17775224 |
tgccgttgacggcg |
17775237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 25125491 - 25125551
Alignment:
| Q |
27 |
aatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
87 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||| ||||| |||||| ||||||||| |
|
|
| T |
25125491 |
aatagcaacaagcttaacgaccctttcgagccccacaatccaaaccaaacaaagtgaatga |
25125551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 2900649 - 2900730
Alignment:
| Q |
5 |
gtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
87 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||||| |||||| |||||||| |||| ||||| |||||| ||||||||| |
|
|
| T |
2900649 |
gtaccatcaactccctacaac-aatggcagcaagctaaacgaccatttcgagcctcacagtccaaatcaaacgaagtgaatga |
2900730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 33440414 - 33440334
Alignment:
| Q |
5 |
gtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatg |
86 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||| | |||||| ||||||||| |||| ||||| ||| ||| |||||||| |
|
|
| T |
33440414 |
gtaccttcaactccctacaac-aatagcagcaagttaaacgaccctttcgagccgcacaatccaaatcacacaaagtgaatg |
33440334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University