View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_142 (Length: 329)
Name: NF1498_low_142
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_142 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 144 - 311
Target Start/End: Complemental strand, 812395 - 812225
Alignment:
| Q |
144 |
gggagcaaggacaatgatacgaaatgaaagtaatttggatatactttgaaacctgaattcgatctgagcttaattcatggcatagtgatgttgaagtcaa |
243 |
Q |
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| T |
812395 |
gggagcaaggacaatgatacgaaatgaaagtaatttggatatactttgaaacctgaattcgatctgagcttaattcatggcatagtgatgttgaagtcaa |
812296 |
T |
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| Q |
244 |
actaacatggctatcatgaatca---acaaggtaccaggttgttaagtacacacatgttgtaaacctataa |
311 |
Q |
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| T |
812295 |
actaacatggctatcatgaatcaacaacaaggtaccaggttgttaagtacatacatgttgtaaacctataa |
812225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 811667 - 811605
Alignment:
| Q |
229 |
tgatgttgaagtcaaactaacatggctatcatgaatcaacaaggtaccaggttgttaagtaca |
291 |
Q |
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| T |
811667 |
tgattttgaagtcagactaacattgctagcatgaatcaactaggtacgaggttgtcaagtaca |
811605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 1031820 - 1031858
Alignment:
| Q |
145 |
ggagcaaggacaatgatacgaaatgaaagtaatttggat |
183 |
Q |
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| T |
1031820 |
ggagcaaagacaatgatacgaaatgaaagtaatttggat |
1031858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 812482 - 812442
Alignment:
| Q |
43 |
taataagagtggaagaagagg-atgggtattttctatgtcg |
82 |
Q |
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| T |
812482 |
taataagagtggaagaagggggatgggtattttctatgtcg |
812442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 22656 - 22694
Alignment:
| Q |
145 |
ggagcaaggacaatgatacgaaatgaaagtaatttggat |
183 |
Q |
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| T |
22656 |
ggagcaaagacaatgatacgaaatgaaagtaatttggat |
22694 |
T |
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