View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_146 (Length: 327)
Name: NF1498_low_146
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_146 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 3578450 - 3578588
Alignment:
| Q |
91 |
tatttggtacggatattaccgtacgaaaatatagggacgcgtgtgaattgtcattatgtacgcgttaaatttcacacattaaaataaaataaatcaagac |
190 |
Q |
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| T |
3578450 |
tatttggtacggatattaccgtacgaaaatttacggacgcgtgtgaattgtcattatgcacgcgctaaatttcacacattaaaataaaataaatcaagac |
3578549 |
T |
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| Q |
191 |
taaattaaaactccgtcttctttcccttcatttttaacc |
229 |
Q |
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| T |
3578550 |
taaattaaaaccccgtcttctttcccttcatttttaacc |
3578588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 3578615 - 3578710
Alignment:
| Q |
231 |
atgtgacatgtattaaaacccctcatttgtacacctgtccttcttttttaggtgcagaaagaaagtattctttccacttgatattcttggacatgc |
326 |
Q |
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| T |
3578615 |
atgtgacatatattaaaacccctcatttgtacatatgtccttcttttttaggtgcagaaagaaagtattctttccacttgatattattgtacatgc |
3578710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 45218817 - 45218679
Alignment:
| Q |
91 |
tatttggtacggatattaccgtacgaaaatatagggacgcgtgtgaattgtcattatgtacgcgttaaatttcacacattaaaataaaataaatcaagac |
190 |
Q |
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| T |
45218817 |
tatttggtacggatattaccgtacgaaaatttacggacgcgtgtgaattatcattatgaacgcgctaaatttcacacattaaaataaaataaatcaagac |
45218718 |
T |
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| Q |
191 |
taaattaaaactccgtcttctttcccttcatttttaacc |
229 |
Q |
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| T |
45218717 |
taaattaaaacccggtcttctttcccttcatttttaacc |
45218679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 45218639 - 45218565
Alignment:
| Q |
241 |
tattaaaacccctcatttgtacacctgtccttcttttttaggtgcagaaagaaagtattctttccacttgatatt |
315 |
Q |
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| T |
45218639 |
tattaaaacccctcatttgtacatttgtccttcttttttaggtgcagaaagaaagtattctttccacttgatatt |
45218565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 3564696 - 3564821
Alignment:
| Q |
103 |
atattaccgtacgaaaatatagggacgcgtgtgaattgtcattatgtacgcgttaaatttcacacattaaaataaaataaatcaagactaaattaaaact |
202 |
Q |
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| T |
3564696 |
atattaccgtacgaaaatttacggatgcgtgtgaattgtcattatgcacgcgctaaatttcacaaattaaaataaaataaatcaagactaaattaaaacc |
3564795 |
T |
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| Q |
203 |
ccgtcttctttcccttcatttttaacc |
229 |
Q |
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| T |
3564796 |
cagtcttc-ttcccttcatttttaacc |
3564821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 3564849 - 3564932
Alignment:
| Q |
231 |
atgtgacatgtat--taaaacccctcatttgtacacctgtccttcttttttaggtgcagaaagaaagtattctttccacttgatatt |
315 |
Q |
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| T |
3564849 |
atgtgacatgtatattaaaacccctcatttgtacatctgtcctt---ttttaggtgcagaaagaaagtattctttccacttgatatt |
3564932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 24932985 - 24932924
Alignment:
| Q |
19 |
aaatatatgtctgtacttagagatatactattaaatgttgttatttactgtcattttttata |
80 |
Q |
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| T |
24932985 |
aaatgtatgtctgtacttagatatatactattaaatgttgttatttactgccattttctata |
24932924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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