View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_147 (Length: 325)
Name: NF1498_low_147
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_147 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 2907919 - 2907657
Alignment:
| Q |
8 |
ataatactgctagattccaccaaaaagagtttacatctcaatctcattcccaggagagaggggaatgagatgaacatcttgacctccttttcttttaagt |
107 |
Q |
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| T |
2907919 |
ataacactgctagattccaccaaaaagagtttacatctcaatctcattcccaggagagaggggaatgagatgaacatcttgacctccttttcttttaagt |
2907820 |
T |
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| Q |
108 |
tttaagtataaccctaaatagtaattaatccatttaaatttatcaaaaggatattttgtacttacacacatcaataagnnnnnnnnncttccctatgcat |
207 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
2907819 |
tttaagtatacccctaaatagtaattaatccatttaaatttatcaaaaggatattttgtacttacacacatcaataa--ttttttttttttcctatgcat |
2907722 |
T |
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| Q |
208 |
ttacctctaaaccttgcatcgggtttcattggaaaatgtttaaagaggtcactgtttgtttcatt |
272 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2907721 |
ttacgtctaaaccttgcatcgggtttcattggaaaatgtttaaagaggtcactgtttgtttcatt |
2907657 |
T |
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