View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_148 (Length: 325)
Name: NF1498_low_148
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_148 |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 36473719 - 36473518
Alignment:
| Q |
13 |
atacttcatgtgattaattccattcaattattggatggcattagtactttataggagttgcacatttttcataaatatagtttttcatacataactccca |
112 |
Q |
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| T |
36473719 |
atacttcatgtgattaattccattcaattattggatggcattagtactttataggagttgcacatttttcataaatatagtttttcatacataactccca |
36473620 |
T |
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| Q |
113 |
aaattgaaatggggctaatccatcctttcatacatacgaatagacttagcatcactgatctccaaaaccaatatcattccttccgcccattggaaacgac |
212 |
Q |
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| T |
36473619 |
aaattgaaat-gggctaatccatcctttcatacatacgaatagacttagtatcactgatctccaaaaccaatatcattccttccgcccattggaaacgac |
36473521 |
T |
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| Q |
213 |
gca |
215 |
Q |
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||| |
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| T |
36473520 |
gca |
36473518 |
T |
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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 32601010 - 32601095
Alignment:
| Q |
240 |
tgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccaca |
325 |
Q |
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| T |
32601010 |
tgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcccaca |
32601095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 32590551 - 32590624
Alignment:
| Q |
252 |
gtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccaca |
325 |
Q |
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| T |
32590551 |
gtgaattatcatattaattttacctatgccaattatctttaatatctcctgttgttctccaactatttcccaca |
32590624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 24883434 - 24883382
Alignment:
| Q |
273 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccaca |
325 |
Q |
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| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccaca |
24883382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 34594089 - 34594143
Alignment:
| Q |
271 |
ttacctattccagttatcttcaatatctccagttgttctccaactatttcccaca |
325 |
Q |
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| T |
34594089 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccaca |
34594143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 34578391 - 34578443
Alignment:
| Q |
273 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccaca |
325 |
Q |
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| T |
34578391 |
acctcttccaattatcttctatatcacccgtggttctccaactatttcccaca |
34578443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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