View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_149 (Length: 324)
Name: NF1498_low_149
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_149 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 4575792 - 4576091
Alignment:
| Q |
17 |
aaatgattggttgagttaccaaaacaatatgatgggttgtgattttgtgnnnnnnnnttaaaa-tatgagttatttttcttacatgagttcctggctatg |
115 |
Q |
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| T |
4575792 |
aaatgattggttgagttaccaaaacaatatgatgggttgtgattttgtgaaaaaaaaataaaaataggagttatttttcttacatgagttcctggctatg |
4575891 |
T |
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| Q |
116 |
gttgcatctggtgtaacctcctttggatgtgaagaaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttcttctgcttcaaaaatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4575892 |
gttgcatctggtgtaacctcctttggatgtgaagaaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttctt---cttcaaaaatc |
4575988 |
T |
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| Q |
216 |
caattgatgaaatagacaaattattttcctcttcatctttttcatcagtaactggtaattttgttataatttcttcagtaatagtatcttctacctttgc |
315 |
Q |
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| T |
4575989 |
caattgatgaaatacacaaattattttcctcttcatctttttcatcagtaacaggtaattttgttataatttcttcagtaatagtatcttctacctttac |
4576088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 107 - 306
Target Start/End: Original strand, 4593540 - 4593748
Alignment:
| Q |
107 |
ctggctatggttgcatctggtgtaacctcctttggatgtgaagaaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttcttctgct |
206 |
Q |
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| T |
4593540 |
ctggctatgaatgcatctggtttaacatgccttggaggtggaaaaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttctt---ct |
4593636 |
T |
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| Q |
207 |
tcaaaaatc---------------caattgatgaaatagacaaattattttcctcttcatctttttcatcagtaactggtaattttgttataatttcttc |
291 |
Q |
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| T |
4593637 |
tcaaaaatccaattgataatatttcaattgatgaaatacacaaattattttcctct---tctttttcatcagtaaccgataattttgttataatttcttc |
4593733 |
T |
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| Q |
292 |
agtaatagtatcttc |
306 |
Q |
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| T |
4593734 |
agcaatagtatcttc |
4593748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 104 - 302
Target Start/End: Original strand, 4586614 - 4586827
Alignment:
| Q |
104 |
ttcctggctatggttgcatctggtgtaacctcctttggatgtgaagaaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttcttct |
203 |
Q |
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|||| ||||||||||||||||||| |||| | |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4586614 |
ttcccggctatggttgcatctggtttaacatggtttggaggtggataaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttcttct |
4586713 |
T |
|
| Q |
204 |
gcttcaaaaatccaattgat---------------gaaatagacaaattattttcctcttcatctttttcatcagtaactggtaattttgttataatttc |
288 |
Q |
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| T |
4586714 |
tcttcaaacttccaattgataatatttcagttgaagaactgcacaaattgttttcctcttcttcttttttatccgtaactgataattctgttataatttc |
4586813 |
T |
|
| Q |
289 |
ttcagtaatagtat |
302 |
Q |
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||||| |||||||| |
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| T |
4586814 |
ttcagcaatagtat |
4586827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 4601954 - 4602051
Alignment:
| Q |
104 |
ttcctggctatggttgcatctggtgtaacctcctttggatgtgaagaaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttctt |
201 |
Q |
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||||| |||||||||||||||| | |||| | ||||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
4601954 |
ttcctagctatggttgcatctgatttaacattctttggaggtggagaaacaatgtcagcaacaagtccatttaaatcaagaacaataagctttttctt |
4602051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 4537880 - 4537968
Alignment:
| Q |
219 |
ttgatgaaatagacaaattattttcctcttcatctttttcatcagtaactggtaattttgttataatttcttcagtaatagtatcttct |
307 |
Q |
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| T |
4537880 |
ttgaagaaatacacaaattattttcctcttcttcttttttatcaataacagataattctgttataatttcttcagcaatagtatcttct |
4537968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 4537833 - 4537761
Alignment:
| Q |
233 |
aaattattttcctcttcatctttttcatcagtaactggtaattttgttataatttcttcagtaatagtatctt |
305 |
Q |
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| T |
4537833 |
aaattatttttctcttcttcttttttatcaggaattggtaattcttttataatttcttcagcaatagtatctt |
4537761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 4602107 - 4602181
Alignment:
| Q |
242 |
tcctcttcatctttttcatcagtaactggtaattttgttataatttcttcagtaatagtatcttctacctttgct |
316 |
Q |
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|||||||| | ||||||||| |||||| |||||||||||| ||||||| || ||||||||| |||| ||||||| |
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| T |
4602107 |
tcctcttcttttttttcatccttaactgataattttgttatcatttcttgagcaatagtatcctctaactttgct |
4602181 |
T |
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