View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_151 (Length: 322)

Name: NF1498_low_151
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_151
NF1498_low_151
[»] chr8 (1 HSPs)
chr8 (27-274)||(41749926-41750174)
[»] scaffold1809 (1 HSPs)
scaffold1809 (250-293)||(382-425)
[»] chr2 (2 HSPs)
chr2 (244-291)||(13137182-13137229)
chr2 (244-291)||(13137264-13137311)
[»] scaffold1063 (1 HSPs)
scaffold1063 (244-293)||(2799-2848)
[»] scaffold0520 (1 HSPs)
scaffold0520 (244-293)||(1310-1359)
[»] scaffold0080 (1 HSPs)
scaffold0080 (244-293)||(27423-27472)
[»] chr7 (1 HSPs)
chr7 (244-293)||(48645766-48645815)
[»] chr5 (2 HSPs)
chr5 (244-293)||(4099297-4099346)
chr5 (249-293)||(35432234-35432278)
[»] chr3 (1 HSPs)
chr3 (244-293)||(30219757-30219806)
[»] chr1 (1 HSPs)
chr1 (244-293)||(21018228-21018277)
[»] chr4 (1 HSPs)
chr4 (56-120)||(22093029-22093093)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 41750174 - 41749926
Alignment:
Q  27 aatttattgtgatactagacgaaatcttgtagaaaattggtacaattaccaaacaaataaagttaatcgattcgaaagaactgatcactttaatttctta 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41750174 aatttattgtgatactagacgaaatcttgtagaaaattggtacaattaccaaacaaataaagttaatcgattcgaaagaacttatcactttaatttctta 41750075  T
Q  127 atttaccaaatcccatttactttttgttgaactaacatatatgtcttgcatacaccctcatttgttaattt-ttattataattaaattgctgagtcgaga 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  41750074 atttaccaaatcccatttactttttgttgaactaacatatatgtcttgcatacaccctcatttgataatttcttattataattaaattgctgagtcgaga 41749975  T
Q  226 ttgaaatattttctgtggacgaatttattttattatttcgatgaatttt 274  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  41749974 ttgaaatatttaatgtggacgagtttattttattatttcgatgaatttt 41749926  T

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Target: scaffold1809 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 382 - 425
Alignment:
Q  250 ttattttattatttcgatgaatttttattacacttgttaaaagt 293  Q
    ||||||||||||||||||| ||||||| |||||||| |||||||    
T  382 ttattttattatttcgatgcatttttagtacacttgctaaaagt 425  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 13137182 - 13137229
Alignment:
Q  244 acgaatttattttattatttcgatgaatttttattacacttgttaaaa 291  Q
    ||||| ||||||||||||||||||| ||||||| |||||||| |||||    
T  13137182 acgaacttattttattatttcgatgcatttttagtacacttgctaaaa 13137229  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 13137264 - 13137311
Alignment:
Q  244 acgaatttattttattatttcgatgaatttttattacacttgttaaaa 291  Q
    ||||| ||||||||||||||||||| ||||||| |||||||| |||||    
T  13137264 acgaacttattttattatttcgatgcatttttagtacacttgctaaaa 13137311  T

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Target: scaffold1063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 2799 - 2848
Alignment:
Q  244 acgaatttattttattatttcgatgaatttttattacacttgttaaaagt 293  Q
    ||||| ||||||||||| ||||||| ||||||| |||||||| |||||||    
T  2799 acgaacttattttattacttcgatgcatttttagtacacttgctaaaagt 2848  T

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Target: scaffold0520 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 1359 - 1310
Alignment:
Q  244 acgaatttattttattatttcgatgaatttttattacacttgttaaaagt 293  Q
    ||||| ||||||||||| ||||||| ||||||| |||||||| |||||||    
T  1359 acgaacttattttattacttcgatgcatttttagtacacttgctaaaagt 1310  T

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Target: scaffold0080 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 27423 - 27472
Alignment:
Q  244 acgaatttattttattatttcgatgaatttttattacacttgttaaaagt 293  Q
    ||||| ||||||||||| ||||||| ||||||| |||||||| |||||||    
T  27423 acgaacttattttattacttcgatgcatttttagtacacttgctaaaagt 27472  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 48645766 - 48645815
Alignment:
Q  244 acgaatttattttattatttcgatgaatttttattacacttgttaaaagt 293  Q
    ||||| ||||||||||| ||||||| ||||||| |||||||| |||||||    
T  48645766 acgaacttattttattacttcgatgcatttttagtacacttgctaaaagt 48645815  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 4099346 - 4099297
Alignment:
Q  244 acgaatttattttattatttcgatgaatttttattacacttgttaaaagt 293  Q
    ||||| ||||||||||| ||||||| ||||||| |||||||| |||||||    
T  4099346 acgaacttattttattacttcgatgcatttttagtacacttgctaaaagt 4099297  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 35432278 - 35432234
Alignment:
Q  249 tttattttattatttcgatgaatttttattacacttgttaaaagt 293  Q
    |||| ||||||| ||||||| ||||||| ||||||||||||||||    
T  35432278 tttaatttattacttcgatgcatttttaatacacttgttaaaagt 35432234  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 30219806 - 30219757
Alignment:
Q  244 acgaatttattttattatttcgatgaatttttattacacttgttaaaagt 293  Q
    ||||||||||||||||| ||||||| ||||||| || ||||| |||||||    
T  30219806 acgaatttattttattacttcgatgcatttttagtaaacttgctaaaagt 30219757  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 21018277 - 21018228
Alignment:
Q  244 acgaatttattttattatttcgatgaatttttattacacttgttaaaagt 293  Q
    ||||| ||||||||||| ||||||| ||||||| ||||| ||||||||||    
T  21018277 acgaacttattttattacttcgatgcatttttagtacacctgttaaaagt 21018228  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 22093093 - 22093029
Alignment:
Q  56 tagaaaattggtacaattaccaaacaaataaagttaatcgattcgaaagaactgatcactttaat 120  Q
    |||||||| |||||||||||||||||   ||| ||||| |||||||| ||  |||||||||||||    
T  22093093 tagaaaataggtacaattaccaaacagtgaaaattaattgattcgaaggacttgatcactttaat 22093029  T

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