View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_153 (Length: 313)
Name: NF1498_low_153
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_153 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 82 - 295
Target Start/End: Complemental strand, 7790563 - 7790350
Alignment:
| Q |
82 |
tttgtccctggtgtttaacacaggatggaatgggatgggaaatgagcatggaggatgtgtttggttatatagagtgaaaacaagagggtactttggccat |
181 |
Q |
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| T |
7790563 |
tttgtccctggtgtttaacacaggatggaatgggatgggaaatgagcatggaggatgtgtttggttatatagagtgaaaacaagagggtactttggccat |
7790464 |
T |
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| Q |
182 |
ttcatattttatattaaaatattggtgtatctataattccgtcactgtttgtgattaattgacaggttaattaaaatagtggcatgggaccaaagaaaag |
281 |
Q |
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| T |
7790463 |
ttcatattttatattaaaatattggtccatctataattccgtcactgtttgtgattaattgacaggttaattaaaatagtggcatgggaccaaagaaaag |
7790364 |
T |
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| Q |
282 |
aggatggcttatag |
295 |
Q |
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| T |
7790363 |
aggatggcttatag |
7790350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 7790628 - 7790592
Alignment:
| Q |
17 |
gagctactgaatatccccaacatattttttctctctc |
53 |
Q |
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| T |
7790628 |
gagctactgaatatccccaacatattttttctctctc |
7790592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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