View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_154 (Length: 312)

Name: NF1498_low_154

Description: NF1498

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1498_low_154

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 127; E-Value: 1e-65

Query Start/End: Original strand, 1 - 177

Target Start/End: Complemental strand, 7646344 - 7646166

Alignment:

Q	1	gctatcatgatttacaacatgcactaactatttgtgctaggcatcaacgataaataaattaattgatgtgttatttttaatccaaggagccaatttagat	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	7646344	gctatcatgatttacaacatgcactaactatttgtgctaggcatcaacgataaataaattaattgatgtgttatttttaatcgaaggagccaatttagat	7646245	T

Q	101	tcatatgatca-nnnnnnnncattactaagacaaataaattaacaatgaaaacttagaggac-aaacaaaattaaatat	177	Q
		\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	7646244	tcatatgttcatttttttttcattactaagacaaataaattaacaatgaaaacttagaggacaaaaaaaaattaaatat	7646166	T

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Target: chr5; HSP #2

Raw Score: 36; E-Value: 0.00000000003

Query Start/End: Original strand, 265 - 308

Target Start/End: Complemental strand, 7646081 - 7646038

Alignment:

Q	265	tatgtgttctgagatggattaatattgtgaagggagatgatgtc	308	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	7646081	tatgtgttctgagatggattaatattgtgaagggatgtgatgtc	7646038	T

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