View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_157 (Length: 311)

Name: NF1498_low_157
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_157
NF1498_low_157
[»] chr2 (1 HSPs)
chr2 (1-298)||(33644338-33644635)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 33644635 - 33644338
Alignment:
Q  1 ctgtaaacaatatgaaatgttgtttgcaagattttaaagtgcggttataattgtgtctgcaagttttgacattgcagagaatcctagtcaactgcgacct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33644635 ctgtaaacaatatgaaatgttgtttgcaagattttaaattgcggttataattgtgtctgcaagttttgacattgcagagaatcctagtcaactgcgacct 33644536  T
Q  101 caattgtggagacattaaaatccttgatgtcacagcctagattttggttgctaacannnnnnnaaagctgtggttgtgtgtattttgaaacattagatct 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  33644535 caattgtggagacattaaaatccttgatgtcacaacctagattttggttgctaacatttttttaaagctgtggttgtgtgtattttgaaacattagatct 33644436  T
Q  201 ctcattttctctttctgcatgtacttgcttattcctttgctcaattttgaatttatcactagttatcaatcatatgtcaacttgtgattcttatagaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33644435 ctcattttctctttctgcatgtacttgcttattcctttgctcaattttgaacttatcactagttatcaatcatatgtcaacttgtgattcttatagaa 33644338  T

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