View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_16 (Length: 607)

Name: NF1498_low_16
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_16
NF1498_low_16
[»] chr5 (6 HSPs)
chr5 (304-597)||(39099477-39099766)
chr5 (170-315)||(39099869-39100015)
chr5 (19-158)||(39100081-39100215)
chr5 (214-323)||(3758192-3758301)
chr5 (357-432)||(39194713-39194791)
chr5 (278-340)||(141847-141909)
[»] chr1 (10 HSPs)
chr1 (214-323)||(9221230-9221337)
chr1 (230-286)||(44442278-44442333)
chr1 (222-342)||(46370805-46370925)
chr1 (259-323)||(8836543-8836605)
chr1 (256-319)||(64875-64936)
chr1 (234-323)||(12590656-12590744)
chr1 (221-321)||(47031478-47031576)
chr1 (254-309)||(14774108-14774161)
chr1 (254-322)||(26687531-26687598)
chr1 (233-309)||(28672314-28672388)
[»] chr4 (3 HSPs)
chr4 (214-342)||(50086415-50086542)
chr4 (221-321)||(42956985-42957084)
chr4 (214-319)||(51105918-51106021)
[»] chr7 (6 HSPs)
chr7 (214-322)||(40065790-40065899)
chr7 (265-339)||(28733815-28733889)
chr7 (222-309)||(3256642-3256728)
chr7 (288-342)||(44452121-44452175)
chr7 (297-342)||(46684625-46684670)
chr7 (230-321)||(676396-676484)
[»] scaffold0009 (1 HSPs)
scaffold0009 (222-322)||(189062-189160)
[»] chr2 (5 HSPs)
chr2 (253-342)||(11001490-11001578)
chr2 (211-271)||(28931136-28931196)
chr2 (259-342)||(16717582-16717663)
chr2 (250-338)||(33275936-33276023)
chr2 (254-322)||(18227115-18227181)
[»] chr8 (9 HSPs)
chr8 (230-286)||(29487082-29487138)
chr8 (214-321)||(22209400-22209505)
chr8 (214-320)||(20279562-20279666)
chr8 (214-320)||(21066189-21066293)
chr8 (214-345)||(37166990-37167119)
chr8 (278-342)||(32646792-32646856)
chr8 (250-345)||(7528270-7528363)
chr8 (220-309)||(1576375-1576462)
chr8 (250-311)||(13328360-13328418)
[»] scaffold0192 (1 HSPs)
scaffold0192 (250-321)||(15938-16007)
[»] scaffold0178 (1 HSPs)
scaffold0178 (230-272)||(15910-15952)
[»] chr3 (1 HSPs)
chr3 (233-320)||(39976721-39976805)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 304 - 597
Target Start/End: Complemental strand, 39099766 - 39099477
Alignment:
Q  304 aaaatgtttgaagagtgtttggggcactcgttaacaagatctcttatagtttaggttgttttcgcccttgtttgatgaggttgatatctcttcaagatat 403  Q
    |||| |||||||||||||||||| ||||||||||||||| |||         |||||| |||  || ||||||||||||||||||||||||||||| |||    
T  39099766 aaaaagtttgaagagtgtttgggacactcgttaacaagacctc---------aggttgcttttacc-ttgtttgatgaggttgatatctcttcaagttat 39099677  T
Q  404 aaaactccatacaaaataaactatataaata------actaacaagattaaaatgatctatctaattatggggacatacaaaaccaactattggctaagt 497  Q
    |||||||||||||| ||||||||||||||||      | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099676 aaaactccatacaacataaactatataaatagatgtaagtaacaagattaaaatgatctatctaattatggggacatacaaaaccaactattggctaagt 39099577  T
Q  498 aaccgatcaaaatccatgaatatggcatgtgcaaaattgttggagttcacaaacaaccatgatgcccttaccaattatactttgtctttccaaccctttg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39099576 aaccgatcaaaatccatgaatatggcatgtgcaaaattgttggagttcacaaacaaccatgatgcccttaccaattatactttgtctttccaaccctttg 39099477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 170 - 315
Target Start/End: Complemental strand, 39100015 - 39099869
Alignment:
Q  170 gggaaatgttatcatgtgtttttgg-atactctttaaggactataataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaat 268  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  39100015 gggaaatgtcaacatgtgtttttgggatactctttaaggactataataagtggtaagtatttataaaaatatgtgtattcgatgcattgaaaatcgaaat 39099916  T
Q  269 atttgaacttttttaaaggaataattgtttattttaaaatgtttgaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39099915 atttgaacttttttaaaggaataattgtttattttaaaatgtttgaa 39099869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 39100215 - 39100081
Alignment:
Q  19 gtatcacgtaaaacccttcaaaaaattctgtatctgcatgttgtacaaggtggcaacgggcaacatcctcatttttattatatcatcctcatatatattg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     |||||    
T  39100215 gtatcacgtaaaacccttcaaaaaattctgtatctgcatgttgtacaaggtggcaacgggcaacatcctca-ttttattatatcatcctc----ctattg 39100121  T
Q  119 tacagagtcttggtcatgcacttttttgtgcatgtcttgt 158  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  39100120 tacagagtcttggttatgcacttttttgtgcatgtcttgt 39100081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 3758301 - 3758192
Alignment:
Q  214 ataaatggtaagtatatat--aaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtt 311  Q
    |||||| |||||||| |||  ||||| |||| ||||  ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  3758301 ataaattgtaagtatttatgaaaaaaaatgtatattcaatgcattgaaaatcgaaatatttga-cttttttaaag-aataattgattattttaaaatgtt 3758204  T
Q  312 tgaagagtgttt 323  Q
    | ||||||||||    
T  3758203 taaagagtgttt 3758192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 357 - 432
Target Start/End: Complemental strand, 39194791 - 39194713
Alignment:
Q  357 ggttgttttcgcccttgtttgatgaggttgatatctcttcaagatataaaactccat---acaaaataaactatataaa 432  Q
    ||||| |||||||||||||||||||||||||||||| |||||| ||||||| | |||   | |||||||||||||||||    
T  39194791 ggttgctttcgcccttgtttgatgaggttgatatcttttcaagttataaaatttcataaaaaaaaataaactatataaa 39194713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 141909 - 141847
Alignment:
Q  278 tttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaa 340  Q
    |||||||| |||||||||||||||||   ||| || |||||||| ||||||||||||||||||    
T  141909 tttttaaaagaataattgtttattttggtatgcttaaagagtgtctggggcactcgttaacaa 141847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 214 - 323
Target Start/End: Original strand, 9221230 - 9221337
Alignment:
Q  214 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 313  Q
    ||||| ||||||||| ||| |||||||||||||||  || |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||  ||     
T  9221230 ataaaaggtaagtatttatgaaaatatgtgtattaattgcattggaaatcgaaatattt-aacttttctaaa-gaataattgtttattttaaaatagtta 9221327  T
Q  314 aagagtgttt 323  Q
    ||||||||||    
T  9221328 aagagtgttt 9221337  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 44442333 - 44442278
Alignment:
Q  230 tataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaag 286  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||    
T  44442333 tataaaaatatgtgtatttaatgtattgaaaattgaaatatttg-acttttttaaag 44442278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 46370925 - 46370805
Alignment:
Q  222 taagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 321  Q
    ||||||| || ||||||||||||| |  | | ||||||||||||||| ||| || ||||||||| ||||||||| || |||| | ||| || ||||||||    
T  46370925 taagtatttaaaaaaatatgtgtaatcaacgcattgaaaatcgaaatgtttaaatttttttaaa-gaataattgcttgttttgatatgcttaaagagtgt 46370827  T
Q  322 t-tggggcactcgttaacaaga 342  Q
    | |||| |||||||||| ||||    
T  46370826 tctgggacactcgttaaaaaga 46370805  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 8836543 - 8836605
Alignment:
Q  259 aaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgttt 323  Q
    |||||||||||||||| ||||||||||| |||||||||||||||  ||||| || ||||||||||    
T  8836543 aaatcgaaatatttga-cttttttaaag-aataattgtttatttcgaaatgcttaaagagtgttt 8836605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 64875 - 64936
Alignment:
Q  256 tgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagt 319  Q
    ||||| ||||||||||| ||| ||||||||| ||||||||||||||||| ||||||| ||||||    
T  64875 tgaaattcgaaatattt-aacgtttttaaag-aataattgtttattttagaatgtttaaagagt 64936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 12590656 - 12590744
Alignment:
Q  234 aaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgttt 323  Q
    |||||| |||||||  ||| |||||||||| |||||||| ||||||||| ||   ||||||||||| ||||||||| || |||| |||||    
T  12590656 aaaatacgtgtattcaatgcattgaaaatcaaaatattt-aactttttttaatagataattgtttaatttaaaatgcttaaagaatgttt 12590744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 321
Target Start/End: Complemental strand, 47031576 - 47031478
Alignment:
Q  221 gtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg 320  Q
    |||||||| | ||||||  |||||| |  |||||||| |||||||||||||| |  |||||||||  |||||||  |||||||| ||||||| |||||||    
T  47031576 gtaagtatttgtaaaaacgtgtgtaatgaatgtattggaaatcgaaatatttta--ttttttaaaaaaataattacttattttagaatgtttaaagagtg 47031479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 14774161 - 14774108
Alignment:
Q  254 attgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 309  Q
    |||||||||||||||||||||  |||||||||  |||||||| |||||||| ||||    
T  14774161 attgaaaatcgaaatatttga--ttttttaaacaaataattgattattttagaatg 14774108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 26687598 - 26687531
Alignment:
Q  254 attgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtt 322  Q
    |||||||||||||||||||||  ||||||||| | || |||| |||||||| |||| || |||||||||    
T  26687598 attgaaaatcgaaatatttgactttttttaaaag-attattgcttattttagaatgcttaaagagtgtt 26687531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 28672314 - 28672388
Alignment:
Q  233 aaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 309  Q
    ||||||||||||| |  ||| ||| |||||| ||||||||| |||||||||||  ||||||||||||||||| ||||    
T  28672314 aaaaatatgtgtaatcaatgcatttaaaatcaaaatatttg-acttttttaaa-aaataattgtttattttagaatg 28672388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 50086415 - 50086542
Alignment:
Q  214 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 313  Q
    |||| ||||||| || ||| ||||||||||||||  ||| |||||||||| ||||||||||  |||||| || |||||||||||||||||  |||||||     
T  50086415 ataagtggtaagcatttatgaaaatatgtgtattcaatgcattgaaaatcaaaatatttga--tttttttaaagaataattgtttattttggaatgttta 50086512  T
Q  314 aagagtgt-ttggggcactcgttaacaaga 342  Q
    |||||| |   |||||||||||||||||||    
T  50086513 aagagtttcccggggcactcgttaacaaga 50086542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 321
Target Start/End: Original strand, 42956985 - 42957084
Alignment:
Q  221 gtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg 320  Q
    |||||||| ||||||||| |||||| |  ||| |||| |||| |||||||||| | |||||||||  ||||| || |||||||| ||||||| |||||||    
T  42956985 gtaagtatttataaaaatgtgtgtaattaatgcattggaaattgaaatatttg-atttttttaaaataataactgcttattttagaatgtttaaagagtg 42957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 319
Target Start/End: Complemental strand, 51106021 - 51105918
Alignment:
Q  214 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 313  Q
    |||||| |||| ||| ||| |||||||| ||| |   ||||||||||||  |||||||||| ||||||||||  ||||||||||||||||| ||| |||     
T  51106021 ataaatagtaactatttatgaaaatatgcgtaatccgtgtattgaaaattaaaatatttga-cttttttaaat-aataattgtttattttagaatattta 51105924  T
Q  314 aagagt 319  Q
    ||||||    
T  51105923 aagagt 51105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 40065790 - 40065899
Alignment:
Q  214 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaag--gaataattgtttattttaaaatgtt 311  Q
    |||| |||||||||| ||||||||||  |||||| ||||||||||||||| |||||||| |||||||||||||   | || ||| ||||||||||||| |    
T  40065790 ataagtggtaagtatttataaaaatacatgtattcgatgtattgaaaatcaaaatattt-aacttttttaaagaatactacttgcttattttaaaatgat 40065888  T
Q  312 tgaagagtgtt 322  Q
    |||| ||||||    
T  40065889 tgaaaagtgtt 40065899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 28733815 - 28733889
Alignment:
Q  265 aaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttg-gggcactcgttaaca 339  Q
    |||||||| ||||||||| || ||||||||||||||||||||||| || ||||||||| | || ||||||||||||    
T  28733815 aaatattt-aactttttttaaagaataattgtttattttaaaatgcttaaagagtgttcgaggacactcgttaaca 28733889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 3256642 - 3256728
Alignment:
Q  222 taagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 309  Q
    ||||||| ||| ||||||||||||||   || |||| ||||||||| ||||| |||||||| || ||||||||| ||||||| |||||    
T  3256642 taagtatttatgaaaatatgtgtattcagtgcattggaaatcgaaacatttg-actttttttaaagaataattgcttattttgaaatg 3256728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 44452121 - 44452175
Alignment:
Q  288 aataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 342  Q
    |||||||  ||| |||| ||||||| |||||||| ||||||||||||||||||||    
T  44452121 aataattacttaatttagaatgtttaaagagtgtctggggcactcgttaacaaga 44452175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 46684625 - 46684670
Alignment:
Q  297 ttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 342  Q
    |||||||| |||  || |||||||||||||||||||||||||||||    
T  46684625 ttattttagaattcttaaagagtgtttggggcactcgttaacaaga 46684670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 676396 - 676484
Alignment:
Q  230 tataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 321  Q
    |||||||||||||||| |  ||| ||| ||||||||||||||| ||||||||  ||  |||||||  |||||||| ||||||| ||||||||    
T  676396 tataaaaatatgtgtaatcaatgcatttaaaatcgaaatattt-aacttttt--aataaataattacttattttagaatgtttaaagagtgt 676484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 189160 - 189062
Alignment:
Q  222 taagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 321  Q
    ||||||| ||| |||||||||||| |  |||||||  |||| ||||||||| ||||||||||||| |||||||| ||||||||||||| || ||||||||    
T  189160 taagtatttatgaaaatatgtgtaattaatgtattagaaatagaaatattt-aacttttttaaag-aataattgcttattttaaaatgcttaaagagtgt 189063  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 11001490 - 11001578
Alignment:
Q  253 tattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttgg--ggcactcgttaacaaga 342  Q
    ||||||||||||||| |||||| |||||| |||  |||||||| |||||||||||||||||||| ||||| ||  | |||||||||||||||    
T  11001490 tattgaaaatcgaaacatttga-ctttttaaaa--aataattgcttattttaaaatgtttgaagtgtgttcggaagacactcgttaacaaga 11001578  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 28931196 - 28931136
Alignment:
Q  211 ataataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatt 271  Q
    |||||||||||||| ||| ||| |||| ||||||||| |||||||| ||||| ||||||||    
T  28931196 ataataaatggtaaatatttatgaaaacatgtgtatttgatgtattaaaaattgaaatatt 28931136  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 16717663 - 16717582
Alignment:
Q  259 aaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 342  Q
    ||||| |||||||| || |||||||||| |||||||  |||||||| |||| || |||||||| ||| ||||||||||||||||    
T  16717663 aaatcaaaatattt-aatttttttaaag-aataattacttattttagaatgcttaaagagtgtctggagcactcgttaacaaga 16717582  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 33275936 - 33276023
Alignment:
Q  250 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg-tttggggcactcgttaac 338  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||  || ||||| |||| || ||||||| ||||||||||| ||||||    
T  33275936 atgtattgaaaattgaaatattt-aacttttttaaa-aaataatttcttgttttagaatgcttaaagagtgttttggggcacttgttaac 33276023  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 18227181 - 18227115
Alignment:
Q  254 attgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtt 322  Q
    |||||||||||||||||||| |||||| | || ||||||||  |||||||| ||||||| |||||||||    
T  18227181 attgaaaatcgaaatatttg-acttttatgaa-gaataattacttattttataatgtttaaagagtgtt 18227115  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 29487082 - 29487138
Alignment:
Q  230 tataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaag 286  Q
    ||||||||||||||||||| ||| ||||||||| ||| ||||| |||||||||||||    
T  29487082 tataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaag 29487138  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 214 - 321
Target Start/End: Complemental strand, 22209505 - 22209400
Alignment:
Q  214 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 313  Q
    |||||| |||||||| ||| ||||||| |||| |  |||| ||| ||||| |||||||| ||||||||||| |||||||||| || |||||||||| ||     
T  22209505 ataaatagtaagtatttatgaaaatatatgtaatcaatgtcttggaaatcaaaatattt-aacttttttaa-ggaataattgcttcttttaaaatgctta 22209408  T
Q  314 aagagtgt 321  Q
    ||||||||    
T  22209407 aagagtgt 22209400  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 320
Target Start/End: Original strand, 20279562 - 20279666
Alignment:
Q  214 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 313  Q
    |||| |||||| ||| || ||||||  |||||||  ||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||| |||| ||     
T  20279562 ataagtggtaaatatttaaaaaaatgcgtgtatttaatgtattgaaaattgaaatatttg-actttttgaaa-gaataattgcttattttagaatgctta 20279659  T
Q  314 aagagtg 320  Q
    |||||||    
T  20279660 aagagtg 20279666  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 320
Target Start/End: Original strand, 21066189 - 21066293
Alignment:
Q  214 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 313  Q
    |||| |||||| ||| || ||||||  |||||||  ||||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||| |||| ||     
T  21066189 ataagtggtaaatatttaaaaaaatgcgtgtatttaatgtattgaaaattgaaatatttg-actttttgaaa-gaataattgcttattttagaatgctta 21066286  T
Q  314 aagagtg 320  Q
    |||||||    
T  21066287 aagagtg 21066293  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 214 - 345
Target Start/End: Complemental strand, 37167119 - 37166990
Alignment:
Q  214 ataaatggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttg 313  Q
    ||||||||||| |||  || |||||  |||||||  ||| |||| |||||||| ||||| |  |||||| ||| |||||||||||||||| ||||||||     
T  37167119 ataaatggtaactattcatgaaaatgcgtgtattcaatgcattggaaatcgaactatttaa--ttttttgaag-aataattgtttattttgaaatgttta 37167023  T
Q  314 aagagtgtttgg-ggcactcgttaacaagatct 345  Q
    ||||||||| ||   ||||||||||||||||||    
T  37167022 aagagtgttcggaaacactcgttaacaagatct 37166990  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 32646856 - 32646792
Alignment:
Q  278 tttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaaga 342  Q
    |||||||| |||||||||||||||||||||||||| || | |||  || ||| ||||||||||||    
T  32646856 tttttaaaagaataattgtttattttaaaatgtttaaaaaatgtccggagcattcgttaacaaga 32646792  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 7528270 - 7528363
Alignment:
Q  250 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgtttggggcactcgttaacaagatct 345  Q
    |||||||| |||||||||||||||| ||||  ||||| |||||||  ||||||||||||| || || |||||   || ||||||||||||||||||    
T  7528270 atgtattggaaatcgaaatatttga-ctttcgtaaag-aataattacttattttaaaatgcttaaaaagtgtcacggacactcgttaacaagatct 7528363  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 1576375 - 1576462
Alignment:
Q  220 ggtaagtatatataaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatg 309  Q
    |||| |||| ||| |||||| |||||||  ||| |||||||||||||||||||  | |||||| |  |||||||||||||||||| ||||    
T  1576375 ggtatgtatttatgaaaatacgtgtattcaatgcattgaaaatcgaaatattt--attttttttacagaataattgtttattttagaatg 1576462  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 13328360 - 13328418
Alignment:
Q  250 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtt 311  Q
    ||||||||||||| ||||||||| ||| |||| ||  |||||||||||||||||||||||||    
T  13328360 atgtattgaaaattgaaatattt-aacattttaaa--gaataattgtttattttaaaatgtt 13328418  T

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Target: scaffold0192 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 15938 - 16007
Alignment:
Q  250 atgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtgt 321  Q
    |||| |||||||||||||||||| ||| ||||| ||| ||||||| || |||||||||||||| ||||||||    
T  15938 atgttttgaaaatcgaaatattt-aacatttttcaag-aataattattaattttaaaatgtttaaagagtgt 16007  T

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Target: scaffold0178 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 15952 - 15910
Alignment:
Q  230 tataaaaatatgtgtattagatgtattgaaaatcgaaatattt 272  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||    
T  15952 tataaaaatgtgtgtatttgatgtattgaaaatcaaaatattt 15910  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 39976805 - 39976721
Alignment:
Q  233 aaaaatatgtgtattagatgtattgaaaatcgaaatatttgaacttttttaaaggaataattgtttattttaaaatgtttgaagagtg 320  Q
    ||||||| ||||| |  ||||||||||||| |||| ||||| |||||||||||  |||||||| |||||||| ||||||  |||||||    
T  39976805 aaaaatacgtgtaatcaatgtattgaaaatagaaacatttg-acttttttaaa--aataattgattattttagaatgttcaaagagtg 39976721  T

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