View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_161 (Length: 305)
Name: NF1498_low_161
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_161 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 10321420 - 10321612
Alignment:
| Q |
113 |
cagaaatagaaatgaaactccaagaaagacctcaaattaatatggtaacctacccctaaagcggttattatgaagagctctttcaagaaacgacaaattc |
212 |
Q |
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| T |
10321420 |
cagaaatagaaatgaaactccaagaaagacctcaaattaatatggtaacctacccctaaagcagttattatgaagagctctttcaagaaacgacaaattc |
10321519 |
T |
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| Q |
213 |
ttattatgatagtcgcatctctctcttcttcatttgtatatattgtgccctcatgttaagagttaaggccatgaggagagctcaacccaaaag |
305 |
Q |
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| T |
10321520 |
ttattatgatagtcgcatctctctcttcttcattggtatatattgtgccctgatgttaagacttaaggccatgaggagagctcaactcaaaag |
10321612 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 10321316 - 10321348
Alignment:
| Q |
17 |
aaatggagcatagacaaattcttctcaaacgat |
49 |
Q |
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| T |
10321316 |
aaatggagcatagacaaattcttctcaaacgat |
10321348 |
T |
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