View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_163 (Length: 304)
Name: NF1498_low_163
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_163 |
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Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 33644707 - 33644774
Alignment:
| Q |
14 |
aggtagaaaagttcaagatttggcatttcttggaatgcaaaaagccaaggaacaaagtcacataaact |
81 |
Q |
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| T |
33644707 |
aggtagaaaagttcaagatttggcatttcttggaatgcaaaaagccaaggaacaaagtcacataaact |
33644774 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 33644881 - 33644938
Alignment:
| Q |
220 |
agaagattaaagattcaaacttcatccacattttcacaaattatcagcaatcaaacgt |
277 |
Q |
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| T |
33644881 |
agaagattaaagattcaaacttcatccacattttgacaaattatcagcaatcaaacgt |
33644938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 33644769 - 33644816
Alignment:
| Q |
108 |
taaagttcataaatcatacttactacaatgagtcaaattgaagccttt |
155 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33644769 |
taaacttcataaatcatacttactacaatgagtcaaattgaagccttt |
33644816 |
T |
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