View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_166 (Length: 300)
Name: NF1498_low_166
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_166 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 7285167 - 7285454
Alignment:
| Q |
5 |
gtaggaaagtcgtaacaaactttttcatcctttatgagcatgcccttagagtggtagaaggtgaggaatttaagaaacttagtaatgatgtggcaactgc |
104 |
Q |
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| T |
7285167 |
gtaggaaagtcgtaacaaactttttcatcctttatgagcatgcccttagagtggtagaaggtgaggaatttaagaaacttagtaatgatgtggcaactgc |
7285266 |
T |
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| Q |
105 |
ttatttgaaaagaagacttaagatcaagaatgggctgttgggtgaaggagatcatttccatatgaagtgtcttgcccatatattgaacttagtagtcatg |
204 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7285267 |
ttatttgaaaagaagacttaagatcaagaatgggttgttgggtgaaggagatcatttccatatgaagtgtcttgcccatatattgaacttagtagtcatg |
7285366 |
T |
|
| Q |
205 |
gacgtgttgaaagatcaagatctagcatccgcaatgcagttagatttgtgaggtcttcacctcaaagagctttaaaatggcaagaatg |
292 |
Q |
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| T |
7285367 |
gacgggttgaaagatcaagatctagcatccgcaatgcagttaggtttgtgaggtcttcacctcaaagagctttaaaatgtaaagaatg |
7285454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 105 - 291
Target Start/End: Original strand, 15999908 - 16000104
Alignment:
| Q |
105 |
ttatttgaaaagaagacttaagatcaagaatgggctgttgggtgaaggagatcatttccatatgaagtgtcttgcccatatattgaacttagtagtcatg |
204 |
Q |
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| T |
15999908 |
ttatttgaaaaaaagacttaagatcaagaatgggttgttgggtgaaggggatcacttccatatgaggtgtgttgcccatatattgaacttagtagtcatg |
16000007 |
T |
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| Q |
205 |
gacgtgttgaaagatcaagat----------ctagcatccgcaatgcagttagatttgtgaggtcttcacctcaaagagctttaaaatggcaagaat |
291 |
Q |
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| T |
16000008 |
gacgggttgaaagatcaagatatgtctattgctagcatccgcaatgcggttaggtttgtgaggtcttcacctcaaagagctttgaaatttcaagaat |
16000104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 15999470 - 15999542
Alignment:
| Q |
17 |
taacaaactttttcatcctttatgagcatgcccttagagtggtagaaggtgaggaatttaagaaacttagtaa |
89 |
Q |
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||||||| ||| |||||||| |||| |||||| |||| || ||||||||||||| ||||||| ||||| |||| |
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| T |
15999470 |
taacaaagtttgtcatccttgatgaacatgcctttagggttgtagaaggtgagggatttaagcaactttgtaa |
15999542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 105 - 282
Target Start/End: Complemental strand, 6838901 - 6838714
Alignment:
| Q |
105 |
ttatttgaaaagaagacttaagatcaagaatgggctgttgggtgaaggagatcatttccatatgaagtgtcttgcccatatattgaacttagtagtcatg |
204 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
6838901 |
ttatttgaaacaaagacttaagatcaagaatgggttgttgggtgaaggagatcacttccatatgaggtgtgttgcccatatattgaacttagtagtcatg |
6838802 |
T |
|
| Q |
205 |
gacgtgttgaaagatcaaga----------tctagcatccgcaatgcagttagatttgtgaggtcttcacctcaaagagctttaaaat |
282 |
Q |
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| T |
6838801 |
gacgggttgaaagatcaagatttgtctatttctagcatccgcaatgcggttaggtttgtgaggtcttcacctcaaagagctttgaaat |
6838714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 6839331 - 6839259
Alignment:
| Q |
17 |
taacaaactttttcatcctttatgagcatgcccttagagtggtagaaggtgaggaatttaagaaacttagtaa |
89 |
Q |
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||||||||||| |||||||| |||| |||||| |||| || ||||||||||||| ||||||| ||||| |||| |
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| T |
6839331 |
taacaaactttgtcatccttgatgaacatgcctttagggttgtagaaggtgagggatttaagcaactttgtaa |
6839259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 282
Target Start/End: Original strand, 13307492 - 13307680
Alignment:
| Q |
104 |
cttatttgaaaagaagacttaagatcaagaatgggctgttgggtgaaggagatcatttccatatgaagtgtcttgcccatatattgaacttagtagtcat |
203 |
Q |
| |
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||||||| || ||||||||||||| || |||||| || |||||||||| ||||| || ||||||| |||| | || || ||||||||||| || || || |
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| T |
13307492 |
cttatttaaagagaagacttaagaacatgaatggcctaatgggtgaaggggatcacttgcatatgaggtgtgtagcacacatattgaacttggttgtaat |
13307591 |
T |
|
| Q |
204 |
ggacgtgttgaaagatcaaga----------tctagcatccgcaatgcagttagatttgtgaggtcttcacctcaaagagctttaaaat |
282 |
Q |
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| T |
13307592 |
ggacggcttaaaggatcaagatttgtctatttctagcatccgcaatgctgttaggtttgttagatcttcaccacaaagagcttcaaaat |
13307680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 14596384 - 14596263
Alignment:
| Q |
104 |
cttatttgaaaagaagacttaagatcaagaatgggctgttgggtgaaggagatcatttccatatgaagtgtcttgcccatatattgaacttagtagtcat |
203 |
Q |
| |
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||||||| || ||||||||||||| || ||||||||| |||||||||| | ||| || ||||||| |||| | || || ||||||||||| ||||| | |
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| T |
14596384 |
cttatttaaagagaagacttaagaacatgaatgggctaatgggtgaagggggtcacttgcatatgaggtgtgtagcacacatattgaacttggtagtact |
14596285 |
T |
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| Q |
204 |
ggacgtgttgaaagatcaagat |
225 |
Q |
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||||| || || ||||||||| |
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| T |
14596284 |
ggacggcttaaaggatcaagat |
14596263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 21282919 - 21282818
Alignment:
| Q |
104 |
cttatttgaaaagaagacttaagatcaagaatgggctgttgggtgaaggagatcatttccatatgaagtgtcttgcccatatattgaacttagtagtcat |
203 |
Q |
| |
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||||||| |||||||||||||||| ||||||| || | ||||||||| ||||| || ||||||| |||| | || | ||||||||||| ||||| || |
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| T |
21282919 |
cttatttaaaaagaagacttaagaacaagaattggttaatgggtgaagatgatcactttcatatgaggtgtgtggcatacatattgaacttggtagtaat |
21282820 |
T |
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| Q |
204 |
gg |
205 |
Q |
| |
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|| |
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|
| T |
21282819 |
gg |
21282818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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