View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_178 (Length: 290)
Name: NF1498_low_178
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_178 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 27138421 - 27138687
Alignment:
| Q |
9 |
agcataggaataatttctcacccttaatggagatatgttaaatagaaagagacatatatgcatatcaatagaattctagtgaattccttggaaatattaa |
108 |
Q |
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| T |
27138421 |
agcataggaataatttctcacccttaatggagatatgttaaatagaaagagacatatatgcatatcaatagaattctagtgaattccttggaaatattaa |
27138520 |
T |
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| Q |
109 |
tttgtcatttatgttaacaaaaagttggttctacttggatttttcctactatggggttttggtctacttggttcctttatgcccttacattaatctatga |
208 |
Q |
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| T |
27138521 |
tttgtcatttatgttaacaaaaagttggttctacttggatttttcctactatggggttttggtctacttggttcctttatgcccttacattaatctatga |
27138620 |
T |
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| Q |
209 |
cccatctcaattacctttagttttatattttcctctatctttcactatctatgtctctataatacat |
275 |
Q |
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| T |
27138621 |
cccatctcaattacctttagttttatattttcctctatctttcactatctatgtctctataatacat |
27138687 |
T |
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