View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_18 (Length: 602)
Name: NF1498_low_18
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 197 - 478
Target Start/End: Complemental strand, 18721110 - 18720833
Alignment:
| Q |
197 |
gaataagaaaatgggaattgagaaagagagaatattgttgttggtttggtttttgtgatgttatagtttgaagatgtgacaaagaacagaaactacagtt |
296 |
Q |
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| T |
18721110 |
gaataagaaaatgggaagtgagaaagagagaatattgttgttggtttggtttttgtgatgttatagtttgaagatgtgacaaagaacagaaactacagtt |
18721011 |
T |
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| Q |
297 |
actgtttttnnnnnnnnnnnnnnnnntatgaatatgaagaacaaaacaagagacagaaagggtggtgggaacagaaacagagaagaggtgtgacttgaga |
396 |
Q |
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| T |
18721010 |
actgtttttagagagagagagagag--atgaatatgaagaacaaaacaagagacagaaagggtggtgggaacagaaacagagaagaggtgtgacttgag- |
18720914 |
T |
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| Q |
397 |
gagagtaagatatattaaaggaactttgttttgggcttttgttcctggcggnnnnnnngtgcactattctttgagataattg |
478 |
Q |
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| T |
18720913 |
-agagtgagatatattaaaggaactttgttttgggcttttgttcctggcggtttttttatgcactattctttgagataattg |
18720833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 526 - 590
Target Start/End: Complemental strand, 18720778 - 18720714
Alignment:
| Q |
526 |
gttagatgattttaaaactacaatagttaaaattgaaactaaacatagttccacgtagttaattc |
590 |
Q |
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| T |
18720778 |
gttatatgattttaaaactacaatagttaaaattgaaactcaacatagttccacgtagttaattc |
18720714 |
T |
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