View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_182 (Length: 287)
Name: NF1498_low_182
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_182 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 41652394 - 41652660
Alignment:
| Q |
1 |
gttaagcaggtagatatgacttgcctaagcaatcttattattgagaatgggagaaaagataaggaagttctttagtttttaatggcgcttatgttataac |
100 |
Q |
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| T |
41652394 |
gttaagcaggtagatatgacttgcctaagcaatcttattattgagaatgggagaaaagataaggaagttctttagtttttaatggcgcttatgttataac |
41652493 |
T |
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| Q |
101 |
atgtggaaagggttttcgctgcaagtcatccagattctgtggagcttgagaaagcaaagcagatgctgaaagtacagtcactaaccatcctgaatttact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41652494 |
atgtggaaagggttttcgctgcaagtcatccagattctgtggagcttgagaaagcaaagccgatgctgaaagtacagtcactaaccatcctgaatttact |
41652593 |
T |
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| Q |
201 |
tattgtcaattttatcgttcatattttctgattattgattgtaatgttgtataggagcatgagcagg |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41652594 |
tattgtcaattttatcgttcatattttctgattattgattgtaaagttgtataggagcatgagcagg |
41652660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 22879561 - 22879841
Alignment:
| Q |
1 |
gttaagcaggtagatatgacttgcctaagcaatcttattattgagaat-gggagaaaagataaggaagttctttagtttttaatggcgcttatgttata- |
98 |
Q |
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|||||| ||||||||||||||| |||||| || |||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22879561 |
gttaaggaggtagatatgacttacctaagaaaccttatt---gagaaacgggtgaaaagataaggaagttctttagtttttaatgccgcttatgttatat |
22879657 |
T |
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| Q |
99 |
-acatgtggaaagggttttcgctgcaagtcatccagattctgtggagcttgagaaagcaaagcagatgctgaaagtacagtcactaaccatcctgaattt |
197 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| || |
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| T |
22879658 |
aacaggtggaaagggtttttgctgcaagtcatccagattctgtggagcttgagaaagcaaagcaaatgctgaaagtacagtcgctaaccatcatgaaatt |
22879757 |
T |
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| Q |
198 |
acttattgtcaatt--------------ttatcgttcatattttctgattattgattgtaatgttgtataggagcatgagcagg |
267 |
Q |
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|||||||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22879758 |
acttattgtcaactttaatgccacatggttattgttcatattttctgattgttgattgtaatgttgtataggagcatgagcagg |
22879841 |
T |
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