View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_188 (Length: 283)
Name: NF1498_low_188
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_188 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 6513906 - 6514162
Alignment:
| Q |
18 |
agttttagtttgagacttgttaaatgttgttggatttataatggtggcattgctactattaattacgatgttttattttttaattatgttgatagtgttg |
117 |
Q |
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| T |
6513906 |
agttttagtttgagacttgttaaatgttgttggatttataatggtggcattgctactattaattacaatgttttattttttaattatgttgatagtgttg |
6514005 |
T |
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| Q |
118 |
gatttgtctc----ataagcttgttttgaccacatatttatttgttaccannnnnnnnnaaataacaagaacatagttttttataacaaaattgtcagaa |
213 |
Q |
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| T |
6514006 |
gatttgtctcatatataagcttgttttgaccacatatttatttgttacca-ttttttttaaataacaagaacatagttttttataacaaaattgtcaaaa |
6514104 |
T |
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| Q |
214 |
atatacattaaaaaagtannnnnnnnacagaccaaccgtcaactcgtgtgtccgtctctg |
273 |
Q |
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| T |
6514105 |
atatacattaaaaaagta--ttttttacagaccaaccatcaactcgtgtgtccgtctctg |
6514162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 39854026 - 39854098
Alignment:
| Q |
68 |
tgctactattaattacgatgttttattttttaattatgttgatagtgttggatttgtctcataagcttgtttt |
140 |
Q |
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| T |
39854026 |
tgctgctattaattgtgatgttgtatttcttaactatgttgatgatgttggatttgtctcataagcttgtttt |
39854098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 13056058 - 13055950
Alignment:
| Q |
55 |
ataatggtggcattgctactattaattacgatgttttatttt-ttaattatgttgatagtgttggatttgtctcataagcttgttttgaccacatattta |
153 |
Q |
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| T |
13056058 |
ataattgtggcattgttgctattgattatgat-tttgattttgttaattatgttgatggtgttggatttgtctcctaagcttgtatctaccacaaattta |
13055960 |
T |
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| Q |
154 |
tttgttacca |
163 |
Q |
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| T |
13055959 |
tttgatacca |
13055950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 32918287 - 32918369
Alignment:
| Q |
26 |
tttgagacttgttaaatgttgttggatttataatggtggcattgctactattaattacgatgttttattttttaattatgttg |
108 |
Q |
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| T |
32918287 |
tttgagacttgtttaatgttgttggatttataatggtcacattattgctattaattatgatgctacatttgttaattatgttg |
32918369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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