View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_193 (Length: 280)

Name: NF1498_low_193
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_193
NF1498_low_193
[»] chr3 (1 HSPs)
chr3 (1-280)||(47852071-47852350)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 47852350 - 47852071
Alignment:
Q  1 taaattctggttttcggataatcgcatgaattgttactttcctagttgtgcatgttctaactgatttggtgaaactcaatatgtactatattctatctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47852350 taaattctggttttcggataatcgcatgaattgttactttcctagttgtgcatgttctaactgatttggtgaaactcaatatgtactatattctatctgt 47852251  T
Q  101 tatatttgcaactggtcaaacgatctcgatctaacttggatttcaatttcttagggcaaaaccatttcaacgcctgctatcagtggaaccatactttccg 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47852250 tatatttgcaactggtcaaacgatctcaatctaacttggatttcaatttcttagggcaaaaccatttcaacgcctgctatcagtggaaccatactttccg 47852151  T
Q  201 gaatcacaagaaaaagtgtcattgaaattgccagtgatttgggttatcaggtagtatcataccataatcgtttaatcttt 280  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47852150 gaatcacaagaaaaagtgtcattgaaattggcagtgatttgggttatcaggtagtattataccataatcgtttaatcttt 47852071  T

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