View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_194 (Length: 276)
Name: NF1498_low_194
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_194 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 32601838 - 32601590
Alignment:
| Q |
16 |
tatatctctgacaagtttaatatgttagggaaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaa |
115 |
Q |
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| T |
32601838 |
tatatctctgacaagttaaatatgttagggaaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaa |
32601739 |
T |
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| Q |
116 |
ggcatgaagttgggaatttattcagatgccgggtatcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcactt |
215 |
Q |
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| T |
32601738 |
ggcatgaagttgggaatttattcagatgccgggtatcgacatattaaattttatttcatgatcatgaatatgattgttcaagcattatttatgatcactt |
32601639 |
T |
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| Q |
216 |
acaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatca |
264 |
Q |
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| T |
32601638 |
acaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatca |
32601590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 32591359 - 32591118
Alignment:
| Q |
23 |
ctgacaagtttaatatgttagggaaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatga |
122 |
Q |
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| T |
32591359 |
ctgacaagttaaagatgttagggaaatatgattcccaaggcttccacgtttccttcaggaatcaaggctctagctcattatattcataagaaaggcttga |
32591260 |
T |
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| Q |
123 |
agttgggaatttattcagatgccgggtatcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattg |
222 |
Q |
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| T |
32591259 |
agttgggaatctattcagatgccgggtatcaacatattaaattt--tttg-taatagtgactatgattgttcaaacattatttatgatcacttacaattg |
32591163 |
T |
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| Q |
223 |
ctatgcagaaatcaaacttgtagtaaacgtatgcctggatcattg |
267 |
Q |
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| T |
32591162 |
ctatgcagaaatcaaacttgtagtaaacgtatgcctggatcattg |
32591118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 34579159 - 34578935
Alignment:
| Q |
40 |
ttagggaaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatgaagttgggaatttattca |
139 |
Q |
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| T |
34579159 |
ttaggggaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcataggaaaggcttgaagttgggagtttattca |
34579060 |
T |
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| Q |
140 |
gatgccgggtatcgacatattaaattttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaatcaaac |
239 |
Q |
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| T |
34579059 |
gatgccgggtattaacgcattaaattgtacttggtgaacatgactataattgttcaagcaatatttttgatcacttacaatttttatgcagaaatctaac |
34578960 |
T |
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| Q |
240 |
ttgtagtaaacgtatgcctggatca |
264 |
Q |
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||||||||||||||||||||||||| |
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| T |
34578959 |
ttgtagtaaacgtatgcctggatca |
34578935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 35124823 - 35124623
Alignment:
| Q |
63 |
cttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatgaagttgggaatttattcagatgccgggtatcgacatattaa |
162 |
Q |
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| T |
35124823 |
cttcaacgtttccttcgggaatcaaggctctggctcattatgttcacatgaaaggcttgaagttggggatttattcagatgctgggtatcaacatattaa |
35124724 |
T |
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| Q |
163 |
attttatttgatgatcataaatatgattgttcaagcattatttatgatcacttacaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggat |
262 |
Q |
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| T |
35124723 |
attatatttgatgatcataacaattattttttaaccattatttataat-atctacaatttttatgtagaaatctaacttgtagtaaacgcatgcctggat |
35124625 |
T |
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| Q |
263 |
ca |
264 |
Q |
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|| |
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| T |
35124624 |
ca |
35124623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 34594906 - 34594796
Alignment:
| Q |
41 |
tagggaaatatggttcccaaggcttcaacgtttccttcaggaatcaaggctctagctcattatattcacaggaaaggcatgaagttgggaatttattcag |
140 |
Q |
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|||||||||||||||||||| || |||| ||||| |||||||| |||||| ||||| ||||| |||||| ||||| | |||||||| ||||| |||| |
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| T |
34594906 |
tagggaaatatggttcccaatactgcaacatttccctcaggaatgaaggctttagctgattatgttcacaacaaaggtttaaagttggggatttactcag |
34594807 |
T |
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| Q |
141 |
atgccgggtat |
151 |
Q |
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|||| |||||| |
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| T |
34594806 |
atgctgggtat |
34594796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 34594733 - 34594676
Alignment:
| Q |
207 |
tgatcacttacaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatca |
264 |
Q |
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||||||||| ||||| ||||||||| || |||||||||||||| |||||||||||| |
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| T |
34594733 |
tgatcacttgcaatttttatgcagaactcttacttgtagtaaacgcatgcctggatca |
34594676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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