View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_199 (Length: 273)

Name: NF1498_low_199
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_199
NF1498_low_199
[»] chr3 (16 HSPs)
chr3 (18-263)||(22368070-22368315)
chr3 (18-263)||(22468091-22468351)
chr3 (18-263)||(22630581-22630842)
chr3 (18-263)||(22358145-22358405)
chr3 (18-263)||(22635646-22635906)
chr3 (18-263)||(22442882-22443142)
chr3 (18-263)||(22353954-22354216)
chr3 (18-263)||(22431316-22431555)
chr3 (172-263)||(22458632-22458723)
chr3 (172-263)||(22481613-22481704)
chr3 (28-146)||(22436909-22437027)
chr3 (17-152)||(22458758-22458893)
chr3 (17-152)||(22481739-22481874)
chr3 (18-80)||(22632206-22632268)
chr3 (207-263)||(30989448-30989504)
chr3 (182-263)||(22115327-22115408)
[»] chr4 (1 HSPs)
chr4 (202-263)||(29610710-29610771)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 22368315 - 22368070
Alignment:
Q  18 gggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgacca 117  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| |||||||||    
T  22368315 gggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtcgttaaacactttgattgtcgtttatggatcacggtttctcgacca 22368216  T
Q  118 tataataaagaaaaattgctgaaggacatactgcaacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22368215 tataataaagaaaaattgctgaaggacatactgcaacaagggaaatgtcctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtga 22368116  T
Q  218 gaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  22368115 gaaactacttgcaaggaaaaaggtacgttgtagtgtttgatgatgt 22368070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 22468351 - 22468091
Alignment:
Q  18 gggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgacca 117  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22468351 gggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgttaaacattttgattgtcatgtatggatcacggtgtctcgacca 22468252  T
Q  118 tataataaagaaaaattgctgaaggacatactg---------------caacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttat 202  Q
    || |||| |||||||||| ||| ||| ||  ||               ||||||||| ||| ||||||||| ||||| ||||| |||||| |||||  ||    
T  22468251 tacaatatagaaaaattgttgagggaaattttgctcgatatttacaaacaacaaggggaagatcctcctcagagtctccatcagatggatcgaaagccat 22468152  T
Q  203 tagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22468151 tagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttatagtgtttgatgatgt 22468091  T

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Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 22630842 - 22630581
Alignment:
Q  18 gggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgacca 117  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  22630842 gggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgttaaacactttgattgtcatgaatggatcacggtgtctcgacca 22630743  T
Q  118 tataataaagaaaaattgctgaaggacatactgc---------------aacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttat 202  Q
    || |||| ||||| |||| ||| ||||||  |||               |||||||||||| ||||||||||||||| |||||||||||| |||||  ||    
T  22630742 tacaatatagaaacattgttgagggacattttgctcgagatttacaaacaacaagggaaagatcctcctcaaagtctccatcaaatggatcgaaagccat 22630643  T
Q  203 tagttgatgaagtgagaaactacttgcaaggaaaaaggtatg-ttgtagtgtttgatgatgt 263  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  22630642 tagttgatgaagtgagaaactacttgcaaggaaaaaggtacgtttgtagtgtttgatgatgt 22630581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 22358405 - 22358145
Alignment:
Q  18 gggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgacca 117  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||| ||||| |||||  ||| ||||||||| |||||||||||||||    
T  22358405 gggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaacactttgatcgtcgtgtatggattacggtgtctcgacca 22358306  T
Q  118 tataataaagaaaaattgctgaaggacatactgc---------------aacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttat 202  Q
    || |||| ||||||| || ||| ||||||  |||               ||||| |||||| ||||||||| ||||| | |||||||||| || ||| ||    
T  22358305 tacaatacagaaaaagtgttgagggacattatgctcgagttttacaaacaacaaaggaaagttcctcctcagagtctccgtcaaatggatcgacagtcat 22358206  T
Q  203 tagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22358205 tagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgt 22358145  T

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Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 22635906 - 22635646
Alignment:
Q  18 gggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgacca 117  Q
    ||||||||  ||||||| |||||| || ||||||||||||||||||| ||||||||| ||| | ||||| |||| ||||||||| |||||||||||||||    
T  22635906 gggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaatactttgattgtcgtgtatggattacggtgtctcgacca 22635807  T
Q  118 tataataaagaaaaattgctgaaggacatactgc---------------aacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttat 202  Q
    || |||| ||||||| || ||   |||||  |||               |||||||| ||| ||||||| | ||||| |||||||||||| |||||| ||    
T  22635806 tacaatacagaaaaagtgttgcgagacattatgctcgagttttacaaacaacaaggggaagttcctcctgagagtctccatcaaatggatcgaaagtcat 22635707  T
Q  203 tagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  22635706 tagttgatgaagtgagaaaccactttcaaggaaaaaggtatgttttagtgtttgatgatgt 22635646  T

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Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 22443142 - 22442882
Alignment:
Q  18 gggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgacca 117  Q
    ||||||| ||||||||| |||||| ||||   || ||||||||||||||||||| ||||| || |||||||||| | ||||||||| |||||||| | ||    
T  22443142 gggaggattgggaaaaaccactctagccagacaaatttttgacaaccaaaaggtagttaagcactttgactgtcttttatggatcatggtgtctcaatca 22443043  T
Q  118 tataataaagaaaaattgctgaaggacatactgc---------------aacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagttat 202  Q
    |  ||||  |||||| || ||| ||||||  |||               ||||| |||||| ||||||||| ||||| |||||||||||| || ||| ||    
T  22443042 ttcaatattgaaaaagtgttgagggacattatgctcgagttttacaaacaacaaaggaaagttcctcctcagagtctccatcaaatggatcgacagtcat 22442943  T
Q  203 tagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22442942 tagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgt 22442882  T

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Target: chr3; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 22354216 - 22353954
Alignment:
Q  18 gggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtat--ggatcacggtgtctcgac 115  Q
    ||||||||||||||||| |||||| ||||  ||||||||||||||||||||||| |||||  | ||||| ||| ||||||  |||||||||| |||||||    
T  22354216 gggaggactgggaaaaaccactctagccagaaaagtttttgacaaccaaaaggtagttaagaactttgattgttatgtatatggatcacggtatctcgac 22354117  T
Q  116 catataataaagaaaaattgctgaaggacatactgc---------------aacaagggaaaggtcctcctcaaagtcttcatcaaatggatggaaagtt 200  Q
    |||| || | ||||||| || ||| ||||||  |||               ||| | |||||| ||||||||| ||||| |||||||||||| |||||      
T  22354116 catacaacatagaaaaagtgttgagggacattttgctggagatttacaaacaacgaaggaaagatcctcctcagagtctccatcaaatggatcgaaagcc 22354017  T
Q  201 attagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  22354016 attagttgatgaagtgagaaacaacttgcaaggaaaaaggtacgttgtagtgtttgataatgt 22353954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 22431555 - 22431316
Alignment:
Q  18 gggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgacca 117  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||| | | |||| ||||||| ||||| |||| | |||||||||| ||||||| ||||    
T  22431555 gggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggatcacagtgtctcaacca 22431456  T
Q  118 tataataaagaaaaattgctgaaggacatactgcaacaagggaaaggtc-ctcctcaaagtcttcatcaaatggatggaaagttattagttgatgaagtg 216  Q
    ||| ||| |||||||||| || || | ||  ||| |||||    | |||  |||      || || |||||||||| |||| |||||| ||||| || ||    
T  22431455 tatgatatagaaaaattgttgcagaaaatgttgc-acaagtttgaagtcgatcc------tcctcctcaaatggatcgaaacttattacttgataaactg 22431363  T
Q  217 agaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  22431362 agaaactacttgcaaggaaaaaggtacgttgtagtgtttgatgatgt 22431316  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 22458723 - 22458632
Alignment:
Q  172 caaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    |||||| ||||||||||| || || ||| ||| |||||||||||||| ||||||||||| | ||||||||||||| |||| |||||||||||    
T  22458723 caaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt 22458632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 22481704 - 22481613
Alignment:
Q  172 caaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    |||||| ||||||||||| || || ||| ||| |||||||||||||| ||||||||||| | ||||||||||||| |||| |||||||||||    
T  22481704 caaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt 22481613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 22437027 - 22436909
Alignment:
Q  28 ggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaag 127  Q
    |||||||  ||||| ||||||||||||||||| |||   || ||| | ||||| ||||||||||||||||||||||| ||||||| | |||| | |||||    
T  22437027 ggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaacaatttgactgtcatgtatggatcacagtgtctcaatcatacagtaaag 22436928  T
Q  128 aaaaattgctgaaggacat 146  Q
    |||||||| ||| ||||||    
T  22436927 aaaaattgttgagggacat 22436909  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 22458893 - 22458758
Alignment:
Q  17 agggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgacc 116  Q
    |||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||||||||||||  ||||||| | |    
T  22458893 agggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatc 22458794  T
Q  117 atataataaagaaaaattgctgaaggacatactgca 152  Q
    ||| |||| ||||   ||||||| |||||| |||||    
T  22458793 atacaatatagaaggcttgctgagggacatgctgca 22458758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 22481874 - 22481739
Alignment:
Q  17 agggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctcgacc 116  Q
    |||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||||||||||||  ||||||| | |    
T  22481874 agggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatc 22481775  T
Q  117 atataataaagaaaaattgctgaaggacatactgca 152  Q
    ||| |||| ||||   ||||||| |||||| |||||    
T  22481774 atacaatatagaaggcttgctgagggacatgctgca 22481739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 22632268 - 22632206
Alignment:
Q  18 gggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaaca 80  Q
    |||||||||||| |||| |||||| |||||||||||||||||||||| |||| ||||||||||    
T  22632268 gggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaagatcgttaaaca 22632206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 30989504 - 30989448
Alignment:
Q  207 tgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    |||||||||||||||||||||||    |||||||||||| || ||||||||||||||    
T  30989504 tgatgaagtgagaaactacttgcggttaaaaaggtatgtcgttgtgtttgatgatgt 30989448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 22115327 - 22115408
Alignment:
Q  182 atcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    ||||||||||| ||   ||||||  ||||||||||||||| ||||||||   ||| ||||| ||||| ||||||||||||||    
T  22115327 atcaaatggatcgaggattattaactgatgaagtgagaaaatacttgcagaaaaagaggtacgttgtcgtgtttgatgatgt 22115408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 29610771 - 29610710
Alignment:
Q  202 ttagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttgtagtgtttgatgatgt 263  Q
    ||||| |||||||||||||| |||||||| |  ||||||||  ||||||||||||| |||||    
T  29610771 ttagtcgatgaagtgagaaattacttgcaggagaaaaggtaccttgtagtgtttgacgatgt 29610710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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