View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_20 (Length: 596)
Name: NF1498_low_20
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 24114750 - 24115163
Alignment:
| Q |
8 |
acatcatcaagaacatactcataatgtaacgaagtgaggagtccaataaaatctacaaaaaacgaatggtaagagagcaagttaatgaacacacatgacc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || |
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| T |
24114750 |
acatcatcaagaacatactcataatgtaacgaagtgaggagtccaataaaatctacaaaaaacaaatggtaagagagcaagttaatgaacacgcatggcc |
24114849 |
T |
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| Q |
108 |
aa----------aataaaacaaaacctatagagataacaacgaaccaactaagaggaagtaatccaagcgaggcctcaagattgcatcagtcttaatgca |
197 |
Q |
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| T |
24114850 |
aagcatgaccacaataaaacaaaacatacagagataacaacgaaccaactaagaggaagtaatccaagcgaggcctcaagattgcatcagtcttaatgca |
24114949 |
T |
|
| Q |
198 |
ggagagaccatatcgttggataagaaagctgtcatccaatacaacaacggtccttggatgcaatgttatcttgtggcgatttacggtagctttggaacaa |
297 |
Q |
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| T |
24114950 |
ggagagaccatatcgttggataagaaagctgtcatccaacacaacaacggtccttggatgcaatgttatcttgtggcgatttccggtagctttggaacaa |
24115049 |
T |
|
| Q |
298 |
ctcatgctctcagagacatgaaagatagcgagaatatacacgaaaaactcacgaaagacgtgaatgaaatagccaacacagtgacttggaatagtggcat |
397 |
Q |
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| T |
24115050 |
ctcatgctctcagagacatgaaagatagcgagaatatacacgaaaaactcacgaaagacatgaatgaaatagccaacacagtgacttggaatagtggcat |
24115149 |
T |
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| Q |
398 |
ggatcttattgccc |
411 |
Q |
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| T |
24115150 |
ggatcttattgccc |
24115163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 543 - 596
Target Start/End: Original strand, 24115291 - 24115344
Alignment:
| Q |
543 |
atataaagcagctcacatatgcaaacaaataaacaaaggcacgaggataaaata |
596 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24115291 |
atataaagcagttcacatatgcaaacaaataaacaaagacacgaggataaaata |
24115344 |
T |
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