View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_204 (Length: 269)
Name: NF1498_low_204
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_204 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33383910 - 33383661
Alignment:
| Q |
1 |
ttttaaacatagcatgatcataacaaacatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagt |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383910 |
ttttaaacatagcatgatcataacaaatatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagt |
33383811 |
T |
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| Q |
101 |
aattaattactagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383810 |
aattaattactagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttg |
33383711 |
T |
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| Q |
201 |
aaggtggttgtcgatttacattttggatccttaaaaggttcccttgttatg |
251 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33383710 |
aaggtggttgtcgatttacattttggatcctt-aaaggttcccttgttatg |
33383661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33384477 - 33384228
Alignment:
| Q |
1 |
ttttaaacatagcatgatcataacaaacatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagt |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384477 |
ttttaaacatagcatgatcataacaaatatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagt |
33384378 |
T |
|
| Q |
101 |
aattaattactagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384377 |
aattaattactagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttg |
33384278 |
T |
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| Q |
201 |
aaggtggttgtcgatttacattttggatccttaaaaggttcccttgttatg |
251 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33384277 |
aaggtggttgtcgatttacattttggatcctt-aaaggttcccttgttatg |
33384228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33385041 - 33384792
Alignment:
| Q |
1 |
ttttaaacatagcatgatcataacaaacatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagt |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33385041 |
ttttaaacatagcatgatcataacaaatatggtgtgaggcaccagtgtcgatccactaacaatttgatccaccaacatagttgatcttagtaatcctagt |
33384942 |
T |
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| Q |
101 |
aattaattactagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384941 |
aattaattactagtcactcaaggtggcttgcggagtatatatgatcttgtttcccacaactatatatagcaagtgaattgtgacctagtgtcatttcttg |
33384842 |
T |
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| Q |
201 |
aaggtggttgtcgatttacattttggatccttaaaaggttcccttgttatg |
251 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33384841 |
aaggtggttgtcgatttacattttggatcctt-aaaggttcccttgttatg |
33384792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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