View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_218 (Length: 255)

Name: NF1498_low_218
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_218
NF1498_low_218
[»] chr3 (6 HSPs)
chr3 (4-255)||(47986615-47986866)
chr3 (4-255)||(47995902-47996153)
chr3 (4-255)||(48005189-48005440)
chr3 (4-255)||(48014474-48014725)
chr3 (52-118)||(6905806-6905872)
chr3 (58-118)||(32411083-32411143)
[»] chr6 (35 HSPs)
chr6 (53-154)||(5157472-5157573)
chr6 (50-140)||(5426043-5426133)
chr6 (55-154)||(5354458-5354557)
chr6 (50-140)||(5066552-5066642)
chr6 (50-140)||(5073766-5073856)
chr6 (49-126)||(5128289-5128366)
chr6 (55-125)||(5102487-5102557)
chr6 (59-131)||(5096850-5096922)
chr6 (58-140)||(5181785-5181867)
chr6 (50-118)||(5176872-5176940)
chr6 (50-118)||(5243793-5243861)
chr6 (50-118)||(5278699-5278767)
chr6 (50-126)||(5370704-5370780)
chr6 (50-154)||(5397083-5397187)
chr6 (153-255)||(5397215-5397317)
chr6 (49-118)||(5344993-5345062)
chr6 (49-118)||(5690039-5690108)
chr6 (50-126)||(5383459-5383535)
chr6 (50-140)||(5350527-5350611)
chr6 (152-248)||(5096972-5097068)
chr6 (50-125)||(5434168-5434243)
chr6 (174-255)||(5354328-5354409)
chr6 (50-123)||(5447720-5447793)
chr6 (157-247)||(5066416-5066506)
chr6 (50-140)||(5284247-5284337)
chr6 (157-222)||(5073655-5073720)
chr6 (192-248)||(5137387-5137443)
chr6 (167-227)||(5257070-5257130)
chr6 (201-249)||(5284106-5284154)
chr6 (157-248)||(5102335-5102426)
chr6 (52-107)||(5179676-5179731)
chr6 (52-107)||(5281435-5281490)
chr6 (91-120)||(2938282-2938311)
chr6 (97-126)||(5137538-5137567)
chr6 (192-248)||(5128138-5128194)
[»] chr5 (5 HSPs)
chr5 (50-123)||(8877742-8877815)
chr5 (61-116)||(20812421-20812476)
chr5 (58-116)||(12599054-12599112)
chr5 (58-116)||(20838773-20838831)
chr5 (60-118)||(30417963-30418021)
[»] chr7 (1 HSPs)
chr7 (50-120)||(36213707-36213777)
[»] scaffold0294 (1 HSPs)
scaffold0294 (50-131)||(8767-8848)
[»] chr4 (18 HSPs)
chr4 (58-120)||(4344787-4344849)
chr4 (49-115)||(4320502-4320568)
chr4 (58-120)||(4361218-4361280)
chr4 (49-126)||(4123811-4123888)
chr4 (58-123)||(4335486-4335551)
chr4 (62-123)||(6498401-6498462)
chr4 (52-119)||(6532111-6532178)
chr4 (55-123)||(6545323-6545391)
chr4 (55-123)||(6588071-6588139)
chr4 (55-123)||(6675841-6675909)
chr4 (49-122)||(6758856-6758929)
chr4 (55-123)||(6728544-6728612)
chr4 (55-122)||(6753098-6753165)
chr4 (52-122)||(6822826-6822896)
chr4 (53-123)||(6837410-6837480)
chr4 (70-122)||(4133290-4133342)
chr4 (55-123)||(6651205-6651273)
chr4 (55-123)||(6815608-6815676)
[»] chr8 (8 HSPs)
chr8 (63-116)||(3262629-3262682)
chr8 (62-118)||(3407323-3407379)
chr8 (58-115)||(3314999-3315056)
chr8 (58-117)||(3286516-3286575)
chr8 (58-116)||(31175988-31176046)
chr8 (58-115)||(3325003-3325060)
chr8 (58-118)||(3391536-3391596)
chr8 (58-118)||(3364310-3364370)
[»] scaffold0468 (1 HSPs)
scaffold0468 (52-118)||(6146-6212)
[»] scaffold0373 (1 HSPs)
scaffold0373 (53-123)||(9826-9896)
[»] scaffold0813 (1 HSPs)
scaffold0813 (55-123)||(4701-4769)
[»] chr2 (1 HSPs)
chr2 (50-118)||(22584094-22584162)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 47986866 - 47986615
Alignment:
Q  4 ataatactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtctt 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47986866 ataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtctt 47986767  T
Q  104 ggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgccaagtagtagttcccatgaactatcctctttttctaaccaccttcaaaggc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47986766 ggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgccaagtagtagttcccatgaactatcctccttttctaaccaccttcaaaggc 47986667  T
Q  204 ttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47986666 ttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgc 47986615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 47996153 - 47995902
Alignment:
Q  4 ataatactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtctt 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47996153 ataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtctt 47996054  T
Q  104 ggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgccaagtagtagttcccatgaactatcctctttttctaaccaccttcaaaggc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47996053 ggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgccaagtagtagttcccatgaactatcctccttttctaaccaccttcaaaggc 47995954  T
Q  204 ttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47995953 ttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgc 47995902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 48005440 - 48005189
Alignment:
Q  4 ataatactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtctt 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48005440 ataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtctt 48005341  T
Q  104 ggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgccaagtagtagttcccatgaactatcctctttttctaaccaccttcaaaggc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48005340 ggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgccaagtagtagttcccatgaactatcctccttttctaaccaccttcaaaggc 48005241  T
Q  204 ttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48005240 ttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgc 48005189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 48014725 - 48014474
Alignment:
Q  4 ataatactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtctt 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48014725 ataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtctt 48014626  T
Q  104 ggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgccaagtagtagttcccatgaactatcctctttttctaaccaccttcaaaggc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48014625 ggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgccaagtagtagttcccatgaactatcctccttttctaaccaccttcaaaggc 48014526  T
Q  204 ttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48014525 ttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgc 48014474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 6905872 - 6905806
Alignment:
Q  52 tgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||| ||||||||||| ||||||||| | ||||| ||| |||||||||||||||||||||||||||    
T  6905872 tgcggatatgaaggattatcacgtgatatttttccttctctcatttggtcttggatgtcaccaacaa 6905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 32411143 - 32411083
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||||||||| |||| ||| || ||||| ||| |||||||||||| ||||||||||||||    
T  32411143 tatgaaggattatcacatgaagtatttccctctctcatttggtcttagatgtcaccaacaa 32411083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 5157573 - 5157472
Alignment:
Q  53 gcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgc 152  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  || |||||||    
T  5157573 gcggctatgaaggattttctcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcccatctccatttcaaacatctgctgc 5157474  T
Q  153 ca 154  Q
    ||    
T  5157473 ca 5157472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 5426043 - 5426133
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 140  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5426043 tgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcatttggtcttggatgtcaccaacaaataatctcccatccccatttca 5426133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 5354557 - 5354458
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttcatgcacctgctgcca 154  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||  || |||||||||    
T  5354557 ggctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctccgatctccatttcaaacatctgctgcca 5354458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 5066642 - 5066552
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 140  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||    
T  5066642 tgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttggatgtcaccaacaaataatctcccatccctatttca 5066552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 5073856 - 5073766
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 140  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  5073856 tgtgcggctatgaaggattctcacgtgatgtgttcccatcgatcatttggtcttggatgtcaccgacaaataatctcacttccccatttca 5073766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 5128366 - 5128289
Alignment:
Q  49 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc 126  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  5128366 ctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatctggtcttggatgtcaccaacaaatgatctc 5128289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 5102557 - 5102487
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatct 125  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5102557 ggctatgaaggactttcacatgatgtgtttccatctatcatctggtcttggatgtcaccaacaaataatct 5102487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 5096850 - 5096922
Alignment:
Q  59 atgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc 131  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||    
T  5096850 atgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatc 5096922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 5181867 - 5181785
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 140  Q
    ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  5181867 tatgaaggattctcacatgatgtgtttccagcgatcatttggtcttggatgtcaccgacaaataatctcccatccccatttca 5181785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 5176872 - 5176940
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  5176872 tgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaa 5176940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 5243861 - 5243793
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  5243861 tgtgtggctatgaaggattttcacgcgatgtatttccatctatcatctggtcttggatgtcaccaacaa 5243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 5278699 - 5278767
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  5278699 tgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaa 5278767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 5370704 - 5370780
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc 126  Q
    |||| ||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  5370704 tgtgtggccatgtaggattttcacatgatgtttttccatctatcatttggtcttggatgtcaccaacaaattatctc 5370780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 5397083 - 5397187
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttcatgcacctgc 149  Q
    ||||||| ||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||| ||| ||| |||  ||||||||  || ||||    
T  5397083 tgtgcggatatgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcaccaacaattaacctcccatttccatttcaaacatctgc 5397182  T
Q  150 tgcca 154  Q
    |||||    
T  5397183 tgcca 5397187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 5397215 - 5397317
Alignment:
Q  153 caagtagtagttcccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctgga 252  Q
    ||||||||||||| || |||||||| |||||||| || || |||| |||||||||||||||||| ||||||||||| || |||  |||||||||||| ||    
T  5397215 caagtagtagttcgcacgaactatcatctttttcgaaacaacttccaaggcttcgaagtctttgcgtggattgcaattctgaagatcaactttctcttga 5397314  T
Q  253 tgc 255  Q
    |||    
T  5397315 tgc 5397317  T

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Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 5344993 - 5345062
Alignment:
Q  49 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  5344993 ctgtgtggctatgaaggattctcacgcgatgtatttccatctatcatctggtcttggatgtcaccaacaa 5345062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 5690108 - 5690039
Alignment:
Q  49 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||||||  |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  5690108 ctgtgcggacatgaaggattctcacgtgatatatttccatctatcatttggtcttggatgtcaccaacaa 5690039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 5383459 - 5383535
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc 126  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||||  ||||||||||||  ||||||||||||||    
T  5383459 tgtgcggccatgaaggattctcacgtgatgtgtttccatccatcattaagtcttggatgtcctcaacaaataatctc 5383535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 5350527 - 5350611
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 140  Q
    ||||||||||||||||||||||||||||||||||      |||||||   ||||||||||||||||||||||||| | |||| ||||||||    
T  5350527 tgtgcggctatgaaggattttcacgtgatgtgtt------tatcattcattcttggatgtcaccaacaaataatcacccatccccatttca 5350611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 5096972 - 5097068
Alignment:
Q  152 ccaagtagtagttcccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctc 248  Q
    |||| ||||||||||||||||||||  ||  |||| ||  |||||| ||| |||||||||||||||||||| |||| |||||||  |||||||||||    
T  5096972 ccaaatagtagttcccatgaactattatcgatttccaagtaccttccaagtcttcgaagtctttgggtggagtgcagctcagaacttcaactttctc 5097068  T

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Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 5434168 - 5434243
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatct 125  Q
    ||||||| ||||||||||| ||||  ||| | ||||||| |||||||  |||||||||||||||||||||||||||    
T  5434168 tgtgcggttatgaaggattctcacacgatttatttccatttatcattcagtcttggatgtcaccaacaaataatct 5434243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 5354409 - 5354328
Alignment:
Q  174 tatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctggatgc 255  Q
    |||| ||||||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |  |||||||||||| |||||    
T  5354409 tatcatctttttctgaccaccttccaagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgc 5354328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 5447720 - 5447793
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    ||||||| | ||||||||  || | |||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  5447720 tgtgcggatttgaaggatcctcgcatgatgtgtttccatctattattcggtcttggatgtcaccaagaaataat 5447793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 5066506 - 5066416
Alignment:
Q  157 tagtagttcccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttct 247  Q
    |||||| |||||||||||||| ||  |||| ||  |||||| ||| |||||||||||||||||||| ||||  ||||||  ||||||||||    
T  5066506 tagtagctcccatgaactatcatcaatttccaagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagaacatcaactttct 5066416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 5284337 - 5284247
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatcaccatttca 140  Q
    ||||||| ||||| ||| ||||| | |||||||||||||  || |||| ||| ||||||||| |||||||||||||| |||  ||||||||    
T  5284337 tgtgcggttatgagggactttcaagcgatgtgtttccattaataattttgtcatggatgtcagcaacaaataatctcccatttccatttca 5284247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 5073720 - 5073655
Alignment:
Q  157 tagtagttcccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtgga 222  Q
    ||||||||||||||||||||| ||| |||| ||  |||||| | |||||||| |||||||||||||    
T  5073720 tagtagttcccatgaactatcatctatttccaattaccttccatggcttcgatgtctttgggtgga 5073655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 5137443 - 5137387
Alignment:
Q  192 accttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctc 248  Q
    |||||| ||| |||||||||||||||||||| ||||  |||||| ||||||||||||    
T  5137443 accttccaagtcttcgaagtctttgggtggagtgcagttcagaacgtcaactttctc 5137387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 5257130 - 5257070
Alignment:
Q  167 catgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgca 227  Q
    |||||||| || |||||||| ||||| |||| |||||||  ||||||||||||||||||||    
T  5257130 catgaactttcatctttttcgaaccaacttccaaggcttaaaagtctttgggtggattgca 5257070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 5284154 - 5284106
Alignment:
Q  201 ggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctct 249  Q
    |||||| |||||||||||||||||||||||| |||  ||||||||||||    
T  5284154 ggcttcaaagtctttgggtggattgcaactccgaagatcaactttctct 5284106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 5102426 - 5102335
Alignment:
Q  157 tagtagttcccatgaactatcctctttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctc 248  Q
    |||||||||||| |||||||| ||  |||| |   |||||| ||  |||||||||||||||||||| ||||  |||||| ||||||||||||    
T  5102426 tagtagttcccacgaactatcatcgatttccatgtaccttccaaatcttcgaagtctttgggtggagtgcagttcagaacgtcaactttctc 5102335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 5179676 - 5179731
Alignment:
Q  52 tgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggat 107  Q
    ||||||||| ||||||| |||||||||||  |||||| ||||||| ||||||||||    
T  5179676 tgcggctataaaggattctcacgtgatgtagttccatatatcattcggtcttggat 5179731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 5281435 - 5281490
Alignment:
Q  52 tgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggat 107  Q
    ||||||||| ||||||| |||||||||||  |||||| ||||||| ||||||||||    
T  5281435 tgcggctataaaggattctcacgtgatgtagttccatatatcattcggtcttggat 5281490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 2938282 - 2938311
Alignment:
Q  91 atcatttggtcttggatgtcaccaacaaat 120  Q
    ||||||||||||||||||||||||||||||    
T  2938282 atcatttggtcttggatgtcaccaacaaat 2938311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 126
Target Start/End: Complemental strand, 5137567 - 5137538
Alignment:
Q  97 tggtcttggatgtcaccaacaaataatctc 126  Q
    ||||||||||||||||||||||||||||||    
T  5137567 tggtcttggatgtcaccaacaaataatctc 5137538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 5128194 - 5128138
Alignment:
Q  192 accttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctc 248  Q
    |||||| ||| ||||||||||||||| |||| |||| |||||||  |||||||||||    
T  5128194 accttccaagtcttcgaagtctttggatggagtgcagctcagaacttcaactttctc 5128138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 8877742 - 8877815
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8877742 tgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 8877815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 20812421 - 20812476
Alignment:
Q  61 gaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 116  Q
    |||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  20812421 gaaggattatcacgtgatgtttttccttctctcatttggtcttggatgtcaccaac 20812476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 12599112 - 12599054
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 116  Q
    ||||||||||| ||||||||||| ||||| ||| ||| |||||||||||||||||||||    
T  12599112 tatgaaggattatcacgtgatgtttttccttctctcaattggtcttggatgtcaccaac 12599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 20838773 - 20838831
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 116  Q
    ||||||||||| |||| |||||| ||||| ||| |||||||||||||||||||||||||    
T  20838773 tatgaaggattatcacatgatgtttttccttctctcatttggtcttggatgtcaccaac 20838831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 30417963 - 30418021
Alignment:
Q  60 tgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    |||||||||| |||||||||| ||||| | | ||||  |||||||||||||||||||||    
T  30417963 tgaaggatttgcacgtgatgtttttccttgtctcatacggtcttggatgtcaccaacaa 30418021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 36213777 - 36213707
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 120  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36213777 tgtgcggctatgaaggattctcacatgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 36213707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 8848 - 8767
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc 131  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||    
T  8848 tgtgcggccatgaaggattctcacgtgatgtgtttccatctatcattaagtcttggatgtctccaacaaataatctcccatc 8767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 4344787 - 4344849
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 120  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4344787 tatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaacaaat 4344849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 4320568 - 4320502
Alignment:
Q  49 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaa 115  Q
    ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  4320568 ctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaa 4320502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 4361218 - 4361280
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 120  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  4361218 tatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaat 4361280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 4123888 - 4123811
Alignment:
Q  49 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc 126  Q
    ||||| || ||||||||||| || |||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  4123888 ctgtgtggatatgaaggattctctcgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataatctc 4123811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 4335486 - 4335551
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    ||||||||||| || |||||||||||||| ||||| |||||||||||||||  |||||||||||||    
T  4335486 tatgaaggattctcccgtgatgtgtttccttctataatttggtcttggatggtaccaacaaataat 4335551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 6498462 - 6498401
Alignment:
Q  62 aaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    ||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||    
T  6498462 aaggattttcacgtgatgtatttccttctctcattcggtcttggatgtcaccatcaaataat 6498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 6532178 - 6532111
Alignment:
Q  52 tgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaa 119  Q
    ||||||| |||||||||||||  |||||| ||||| ||||||||| ||||||||||||||||| ||||    
T  6532178 tgcggctttgaaggattttcaaatgatgtatttccttctatcattcggtcttggatgtcaccatcaaa 6532111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 6545391 - 6545323
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||| ||||||||||||||||||||| || || ||| ||||| |||||||| |||||||| ||||||||    
T  6545391 ggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggctgtcaccatcaaataat 6545323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 6588139 - 6588071
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||| ||||||||||||||||||||| || || ||| ||||| ||||||||||||| ||| ||||||||    
T  6588139 ggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggatgtcgccatcaaataat 6588071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 6675841 - 6675909
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||| |||||||||||||| |||||| ||||| ||| |||||  |||||||||||||||| ||||||||    
T  6675841 ggctttgaaggattttcacttgatgtatttccttctctcattaagtcttggatgtcaccatcaaataat 6675909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 6758856 - 6758929
Alignment:
Q  49 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataa 122  Q
    ||||| |||| |||||||||| |||||||| | ||||| | | ||||| ||||| |||||||||||||||||||    
T  6758856 ctgtgtggctttgaaggatttgcacgtgatatatttccttttgtcattcggtctaggatgtcaccaacaaataa 6758929  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 6728544 - 6728612
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||| ||||||||||||||||||||| || || ||| |  |||||||||||||||| ||| ||||||||    
T  6728544 ggctttgaaggattttcacgtgatgtattcccttctcttgtttggtcttggatgtcgccatcaaataat 6728612  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 6753098 - 6753165
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataa 122  Q
    |||| ||||||||||||||||||||| || || ||| ||||| |||||||||| || ||| |||||||    
T  6753098 ggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggatatcgccatcaaataa 6753165  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 6822826 - 6822896
Alignment:
Q  52 tgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataa 122  Q
    ||||||| ||||||||||||||||||||| || || ||| ||||| | |||||||| || ||| |||||||    
T  6822826 tgcggctttgaaggattttcacgtgatgtattcccttctctcattcgctcttggatatcgccatcaaataa 6822896  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 6837410 - 6837480
Alignment:
Q  53 gcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||||| ||||||||||||||||||||| || || ||| ||||| | ||||||||||| ||  ||||||||    
T  6837410 gcggctttgaaggattttcacgtgatgtattcccttctctcattcgctcttggatgtcgccttcaaataat 6837480  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 4133342 - 4133290
Alignment:
Q  70 tcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataa 122  Q
    |||||||| || ||||| |||||||||  | ||||||||||||||||||||||    
T  4133342 tcacgtgaagtatttccttctatcattcagacttggatgtcaccaacaaataa 4133290  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 6651205 - 6651273
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||| ||||||||||||||| ||||| ||||| | | || || ||||||||||||||||| ||| ||||    
T  6651205 ggctttgaaggattttcacgagatgtatttccttttctcgttcggtcttggatgtcaccatcaactaat 6651273  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 6815608 - 6815676
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||| |||||||||| |||||||||| ||| | ||| || || | ||||||||||||||| ||||||||    
T  6815608 ggctttgaaggatttacacgtgatgtattttcttctctcgttcgctcttggatgtcaccatcaaataat 6815676  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 3262682 - 3262629
Alignment:
Q  63 aggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 116  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  3262682 aggattttcacgtgatgtttttccctctatcatttggtcttggatgtcaccaac 3262629  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 3407379 - 3407323
Alignment:
Q  62 aaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  3407379 aaggattatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaacaa 3407323  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 3314999 - 3315056
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaa 115  Q
    |||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  3314999 tatgaaggtttatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaa 3315056  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 3286575 - 3286516
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaaca 117  Q
    ||||||||||| |||| |||||| |||| |||| ||||| ||||||||||||||||||||    
T  3286575 tatgaaggattatcacatgatgtttttcaatctctcattaggtcttggatgtcaccaaca 3286516  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 31175988 - 31176046
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaac 116  Q
    ||||||||||| ||| |||| || ||||| ||| |||||||||||||||||||||||||    
T  31175988 tatgaaggattatcatgtgacgtttttccttctctcatttggtcttggatgtcaccaac 31176046  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 3325060 - 3325003
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaa 115  Q
    ||||||||| | ||||  ||||| ||||| ||||||||||||||||||||||||||||    
T  3325060 tatgaaggactatcacacgatgtttttccttctatcatttggtcttggatgtcaccaa 3325003  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 3391596 - 3391536
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||||||||| |||| | |||| ||||| ||| ||||| |||||||||||||||||||||    
T  3391596 tatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgtcaccaacaa 3391536  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 3364310 - 3364370
Alignment:
Q  58 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||||||||| |||| | |||| ||||| ||| ||||| |||||||||| ||||||||||    
T  3364310 tatgaaggattatcacatcatgtttttccttctctcattaggtcttggatatcaccaacaa 3364370  T

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Target: scaffold0468 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 6212 - 6146
Alignment:
Q  52 tgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    ||||| ||||||||||| ||||||||||| ||||| ||  | |||||||||||||||||||||||||    
T  6212 tgcggatatgaaggattatcacgtgatgtttttccttcccttatttggtcttggatgtcaccaacaa 6146  T

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Target: scaffold0373 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 9826 - 9896
Alignment:
Q  53 gcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||||| ||||||||||||||||||||| || || ||| ||||| | ||||||||||| ||  ||||||||    
T  9826 gcggctttgaaggattttcacgtgatgtattcccttctctcattcgctcttggatgtcgccttcaaataat 9896  T

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Target: scaffold0813 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 4769 - 4701
Alignment:
Q  55 ggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat 123  Q
    |||| ||||||||||||||| ||||| ||||| | | || || ||||||||||||||||| ||| ||||    
T  4769 ggctttgaaggattttcacgagatgtatttccttttctcgttcggtcttggatgtcaccatcaactaat 4701  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 22584162 - 22584094
Alignment:
Q  50 tgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaa 118  Q
    |||| |||||||||||| | | | | |||||  |||||||||| |||||||||||||||||| ||||||    
T  22584162 tgtgtggctatgaaggactcttaagcgatgtagttccatctatgatttggtcttggatgtcatcaacaa 22584094  T

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