View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_219 (Length: 255)
Name: NF1498_low_219
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_219 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 9720736 - 9720962
Alignment:
| Q |
19 |
aggggagcatgacaatactcttgtagtcttgttgagttgcaccattaaaggtgtccttacgccattgtctcctttcagcagtgacatggatgcttggatt |
118 |
Q |
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| T |
9720736 |
aggggagcatgacaatactattgtagtcttgttgagttgcaccattaaaggtgtccttacaccattgtctcctttcagcagtgacatggatgcttggatt |
9720835 |
T |
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| Q |
119 |
ctaaggtccatgcagttccaagtcaatgttaaaattcaaacacacgtcatcaatactccttcttagacatgaatggcctcaaaatacccacgtctcaata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9720836 |
ctaaggtccatgcagttccaagtcaatgttaaaattcaaacacacgtgat--attccccttcttagacatgaatggcctcaaaatatccacgtctcaata |
9720933 |
T |
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| Q |
219 |
cagtaccacaacaattaaacattcttttc |
247 |
Q |
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||||||||||||||||| ||||||||||| |
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| T |
9720934 |
cagtaccacaacaattatacattcttttc |
9720962 |
T |
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