View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_22 (Length: 591)
Name: NF1498_low_22
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 68 - 591
Target Start/End: Original strand, 12580905 - 12581428
Alignment:
| Q |
68 |
gagattgataccctaaaaagagagttttgatcatctctatttagtatctcttcannnnnnnct-atttgaagagataaagatacaatgaagtttgaacaa |
166 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| |
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| T |
12580905 |
gagattgatacccgaaaaagagagttttgatcatctctatttagtatctcttaattttttatttatttgaagagataaagatacaatgaagtttgaacaa |
12581004 |
T |
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| Q |
167 |
aataatataaataattaatagtagttgaactcatttagtggtaggatc--cattcaatggtagaatctaccgtctactttttgtacttatatcttactaa |
264 |
Q |
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|||||||||||||||||||||| |||| ||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
12581005 |
aataatataaataattaatagtggttggactcacttagtggtaggatctccattcagtggtagaatctacagtctactttttgtacttatgtcttactaa |
12581104 |
T |
|
| Q |
265 |
atgacattcttcgagaatccttgctcaaaaaaaagcctgttacgcagttnnnnnnnnnn-gaaatatgtgaatcttagtatgaagtatgtcttttaagca |
363 |
Q |
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| T |
12581105 |
atgacattcttcgagaatccttactctaaaaaa-gcttgttacctagttacccagaaaaagaaatatgagaatcttggtatgaagtatgtcttttaagca |
12581203 |
T |
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| Q |
364 |
atgagtcatactaaatttttagaaaaatcaactcatgctaaaaaatagtacacctataaaatatatcaagctagggactggaattttatgagcaagctaa |
463 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |
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| T |
12581204 |
atgagtcgtactaaatttttagaaagatcaactcatgctaaaaaatagtacacctataaaatatatcaagctagggtctcgaattttttgagcaagctaa |
12581303 |
T |
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| Q |
464 |
acttatttagccaaagtctaacttaatctagtcaattctcaattctagtaataatgaaatcaagtgatccggtgacccataaataactttgaccttaaat |
563 |
Q |
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| T |
12581304 |
acttatttagccaaagtctaacttaatctagtcaattctcaattctagtaataatgaaatcaagtgatccggtgacccagaaataactttgaccttaaat |
12581403 |
T |
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| Q |
564 |
catcctattcaaatctaataacttagat |
591 |
Q |
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| T |
12581404 |
ca---tattcagatctaataacttagat |
12581428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 38543839 - 38543876
Alignment:
| Q |
175 |
aaataattaatagtagttgaactcatttagtggtagga |
212 |
Q |
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| T |
38543839 |
aaataattaatagtagtagaactcatttagtggtagga |
38543876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 7844947 - 7845030
Alignment:
| Q |
131 |
atttgaagagataaagatacaatgaagtttgaacaaaataatataaataattaatagtagttgaactcatttagtggtaggatcca |
216 |
Q |
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| T |
7844947 |
atttgaagagataaagatacaaagaagtttgaa-aaaagtata-aactaattaataatggtgggacacacttagtggtaggatcca |
7845030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 30280908 - 30280940
Alignment:
| Q |
131 |
atttgaagagataaagatacaatgaagtttgaa |
163 |
Q |
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| T |
30280908 |
atttgaaaagataaagatacaatgaagtttgaa |
30280940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 35315737 - 35315701
Alignment:
| Q |
176 |
aataattaatagtagttgaactcatttagtggtagga |
212 |
Q |
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| T |
35315737 |
aataattaatagtagttaaactcacttagtggtagga |
35315701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 36733008 - 36733057
Alignment:
| Q |
137 |
agagataaagatacaatgaagtttgaacaaaataatataaataattaatagt |
188 |
Q |
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||||||||||||||| | |||||||| |||| ||||||||||||||||||| |
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| T |
36733008 |
agagataaagatacagtaaagtttga--aaaaaaatataaataattaatagt |
36733057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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