View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_220 (Length: 253)
Name: NF1498_low_220
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_220 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 39454454 - 39454259
Alignment:
| Q |
47 |
acttgcagttggaggatagagccgaagtgtttcattaatgatcatactgacctgttcaaatatgcaaaccaaaaacaattactaggccaattaactcgat |
146 |
Q |
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| T |
39454454 |
acttgcagttggaggatagagccgaagtgtttcattaatgatcatactgacctgttcaaatatgcaaaccaaaaacaattactaggccaattaactcgat |
39454355 |
T |
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| Q |
147 |
caattgttttgttcgtttattgatgcacagcatatttcatacatactgcactattttttaatctaacaaatcaaatttttatgataattcatctca |
242 |
Q |
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| T |
39454354 |
caattgttttgttcgtttattgatgcacagcatatttcatacatactgcactattttttaatctaacaaatcaaatttttatgataattcatctca |
39454259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 39449095 - 39449153
Alignment:
| Q |
57 |
ggaggatagagccgaagtgtttcattaatgatcatactgacctgttcaaatatgcaaac |
115 |
Q |
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| T |
39449095 |
ggaggatagagtcgaagggtttcattaattatcatgctgacctgttggaatatgtaaac |
39449153 |
T |
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