View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_224 (Length: 252)
Name: NF1498_low_224
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_224 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1622523 - 1622299
Alignment:
| Q |
1 |
atcaaaaaagaaattatatttggaaatagtatgattgctaaccgtaacatttgtttcaaacccggcccatacatacacaccgacatttctctgcttatat |
100 |
Q |
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| T |
1622523 |
atcaaaaaagaaattatatttggaaatagtatgattgctaaccgtaacatttgtttcaaacccggcccatacatacacaccgacatttctctgcttatat |
1622424 |
T |
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| Q |
101 |
atagacaccataggctacaacattctcatttcagttcaaaattgttccttcatcatttcaattctttaacgttttggttttgataagttatatataagtt |
200 |
Q |
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| T |
1622423 |
atagacaccataggctacaacattctcatttcagttcaaaattgttcctccatcatttcaattctttagcgttttggttttgataagttatatataagtt |
1622324 |
T |
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| Q |
201 |
actatcttgtttcacatagatatat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
1622323 |
actatcttgtttcacatagatatat |
1622299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 40049202 - 40049370
Alignment:
| Q |
56 |
tcaaacccggcccatacatacacaccgacatttctctgcttatatatagacaccataggctacaacattctcatttcagttcaaaattgttccttca--- |
152 |
Q |
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| T |
40049202 |
tcaaacccagccaatacatacacaccaacatttctctccttatatatagacaccataggctacaaccttttcgtttcagttcaaaattgttccttcatca |
40049301 |
T |
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| Q |
153 |
--tcatttcaattctttaacgttttggttttgataagttatatataagttactatcttgtttcacatagatat |
223 |
Q |
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| T |
40049302 |
tttcatttcaattctgtaacgtattggttttgctaagt----tataagttacaatcttgtgtcacatagatat |
40049370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 40049134 - 40049179
Alignment:
| Q |
14 |
ttatatttggaaatagtatgattgctaaccgtaacatttgtttcaa |
59 |
Q |
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| T |
40049134 |
ttatatttggaaatggtatgattgcaaactgtaacatttgtttcaa |
40049179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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