View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_225 (Length: 252)
Name: NF1498_low_225
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_225 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30286682 - 30286444
Alignment:
| Q |
1 |
tcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286682 |
tcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaata |
30286583 |
T |
|
| Q |
101 |
aattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaagataatttttgccctacctccctaatctccgcataattg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
30286582 |
aattcataaatatttttaacgatagtaattagtgtcacttaaactaataataatcgtttaagataattttcgctctacctccctaatctccgcataattg |
30286483 |
T |
|
| Q |
201 |
accaatatatccaagtctttaagctgtggatgtttctct |
239 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
30286482 |
accaatatatccaagtctttaagctgtggatttttctct |
30286444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30315263 - 30315026
Alignment:
| Q |
1 |
tcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315263 |
tcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaata |
30315164 |
T |
|
| Q |
101 |
aattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaagataatttttgccctacctccctaatctccgcataattg |
200 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| || |||||||| || |||||||||||||| || ||||||||||||||||||||||||| |
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| T |
30315163 |
aattcgtaaatatttttaacgatagtaattagtgtcactttaattaataatagtcttttaagataattttggctctacctccctaatctccgcataattc |
30315064 |
T |
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| Q |
201 |
accaatatatccaagtctttaagctgtggatgtttctc |
238 |
Q |
| |
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|| |||||||||||||||| ||| ||||||| |||||| |
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| T |
30315063 |
actaatatatccaagtcttgaagttgtggatttttctc |
30315026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30304350 - 30304113
Alignment:
| Q |
1 |
tcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaata |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30304350 |
tcaaattctccttttccttcatcaactactactatcaccgtggcccttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaacta |
30304251 |
T |
|
| Q |
101 |
aattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaagataatttttgccctacctccctaatctccgcataattg |
200 |
Q |
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||||||| |||||||||||||| ||||||||||||||||| || |||||||| || |||||||||||||| || ||||||||||||||||||||| | || |
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| T |
30304250 |
aattcattaatatttttaacgatagtaattagtgtcactttaattaataatagtcttttaagataattttcgctctacctccctaatctccgcattagtg |
30304151 |
T |
|
| Q |
201 |
accaatatatccaagtctttaagctgtggatgtttctc |
238 |
Q |
| |
|
|| |||||||||||||||| ||| ||| ||| |||||| |
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| T |
30304150 |
actaatatatccaagtcttgaagttgttgatttttctc |
30304113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30299143 - 30298907
Alignment:
| Q |
1 |
tcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaata |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |
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| T |
30299143 |
tcaaattctccttttccttcatcaactactactatcactgtggcccttgaattgaaatgtggcaacaaaagtgatccctaaaattaaattt-aacaagaa |
30299045 |
T |
|
| Q |
101 |
aattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaagataatttttgccctacctccctaatctccgcataattg |
200 |
Q |
| |
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||||||| |||||||| ||| ||||||||||||||||||| || |||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
30299044 |
aattcattaatattttgaacaacagtaattagtgtcactttaattaataataattttttaagatcatttttgctctacctccctaatctccgcataatta |
30298945 |
T |
|
| Q |
201 |
accaatatatccaagtctttaagctgtggatgtttctc |
238 |
Q |
| |
|
|| |||||||||||||||||||| ||||||| |||||| |
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| T |
30298944 |
actaatatatccaagtctttaagttgtggatttttctc |
30298907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30291716 - 30291486
Alignment:
| Q |
1 |
tcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30291716 |
tcaaattctccttttccttcttcaactgctactatcactgtggcccttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaata |
30291617 |
T |
|
| Q |
101 |
aattcataaatatttttaacgacagtaattagtgtcacttaaactaataataatcgtttaagataatttttgccctacctccctaatctccgcataattg |
200 |
Q |
| |
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||||| |||||||||||||| ||||||||||||| || |||||||| || |||||||| ||||||| |||||||||||||||||||||||| |
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| T |
30291616 |
aattcgtaaatatttttaac-------attagtgtcactttaattaataatagtcttttaagattttttttgctttacctccctaatctccgcataattc |
30291524 |
T |
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| Q |
201 |
accaatatatccaagtctttaagctgtggatgtttctc |
238 |
Q |
| |
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|| |||||||||||||||| ||| ||||||| |||||| |
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| T |
30291523 |
actaatatatccaagtcttgaagttgtggatttttctc |
30291486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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