View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_227 (Length: 251)
Name: NF1498_low_227
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_227 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 20709796 - 20709876
Alignment:
| Q |
171 |
gcaataggtatccaagtacgttgaatgttagctatcgtacacatgaagaactcaattacaattaaggtttttctttggctt |
251 |
Q |
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| T |
20709796 |
gcaataggtatccaagtacgttgaatgttagctatcgtacacatgaagaactcaattacaattaaggtttttctttggctt |
20709876 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 20709641 - 20709717
Alignment:
| Q |
16 |
atttcaaattagaaacataattctttagtcaacgtgattctaactttaatctttaaagtaatttatttaaatagtta |
92 |
Q |
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| T |
20709641 |
atttcaaattagaaacatgattctttagtcaacgtgattctaactttaatctttaaagtaatttatttaaatagtta |
20709717 |
T |
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