View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_228 (Length: 250)
Name: NF1498_low_228
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_228 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 18218282 - 18218524
Alignment:
| Q |
8 |
cagcacagacattatatatgcaattgaaataaaatcctcaatttgatgagaaccatactccatctaattacttagtggaatgaaaatattatcttcacta |
107 |
Q |
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| T |
18218282 |
cagcacacacattatatatgcaattgaaataaaatcctcaatttgatgagaaccatactccatctaattacttagtggaatgaaaatattatcttcacta |
18218381 |
T |
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| Q |
108 |
ctattataaacttcagcagcttctacctagttacgagnnnnnnntcctgcctgactgcacaaattttgcacctttctagaatctccacttggaggatgtt |
207 |
Q |
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| T |
18218382 |
ctattataaacttcagcagcttctacctagttacgagaaaaaaatcctgcctgactgcacaaattttgcacctttctagaatctccacttggaggatgtt |
18218481 |
T |
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| Q |
208 |
agaacattacaccaatggacagcagctgatcataaatgacatc |
250 |
Q |
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| T |
18218482 |
agaacattacaccaatggacagcagctgatcataaatgacatc |
18218524 |
T |
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Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 88 - 250
Target Start/End: Original strand, 43010533 - 43010694
Alignment:
| Q |
88 |
tgaaaatattatcttcactactattataaacttcagcagcttctacctagttacgagnnnnnnntcctgcctgactgcacaaattttgcacctttctaga |
187 |
Q |
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| T |
43010533 |
tgaaaatattatcttcactac-attataaactttagcagcttctacctagttacgagaaaaaaatcctacctgattgcacaaattttgcacctttctaaa |
43010631 |
T |
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| Q |
188 |
atctccacttggaggatgttagaacattacaccaatggacagcagctgatcataaatgacatc |
250 |
Q |
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| T |
43010632 |
atctccacttggaggatgttagaacattacaacaatggacagcagctgatcataaacgacatc |
43010694 |
T |
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