View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_low_230 (Length: 250)

Name: NF1498_low_230
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_low_230
NF1498_low_230
[»] chr5 (10 HSPs)
chr5 (1-240)||(10321607-10321842)
chr5 (1-213)||(22587000-22587208)
chr5 (128-213)||(22598923-22599008)
chr5 (2-73)||(22599097-22599168)
chr5 (117-236)||(35946500-35946619)
chr5 (1-99)||(32064428-32064523)
chr5 (1-62)||(15173490-15173551)
chr5 (114-202)||(15225969-15226058)
chr5 (1-60)||(36975953-36976012)
chr5 (38-67)||(32064762-32064791)
[»] chr6 (8 HSPs)
chr6 (9-236)||(30045301-30045524)
chr6 (17-172)||(28072129-28072279)
chr6 (136-204)||(5466999-5467067)
chr6 (128-194)||(5467195-5467261)
chr6 (128-237)||(35033211-35033322)
chr6 (30-73)||(33447655-33447698)
chr6 (152-204)||(1702062-1702114)
chr6 (24-56)||(1702217-1702249)
[»] chr7 (17 HSPs)
chr7 (36-239)||(25194135-25194334)
chr7 (9-174)||(25194339-25194500)
chr7 (80-213)||(23071928-23072061)
chr7 (80-236)||(3958161-3958316)
chr7 (1-73)||(25194002-25194074)
chr7 (9-197)||(2414348-2414532)
chr7 (2-63)||(17944589-17944650)
chr7 (9-73)||(13789539-13789603)
chr7 (9-50)||(37223584-37223625)
chr7 (17-191)||(23072246-23072416)
chr7 (12-63)||(2304920-2304971)
chr7 (1-56)||(23071775-23071830)
chr7 (4-63)||(37223858-37223917)
chr7 (24-65)||(15019068-15019109)
chr7 (169-213)||(7406811-7406855)
chr7 (151-195)||(7741613-7741657)
chr7 (128-204)||(15019226-15019302)
[»] chr1 (7 HSPs)
chr1 (9-236)||(32025101-32025324)
chr1 (9-236)||(32025397-32025620)
chr1 (1-63)||(4119139-4119201)
chr1 (9-60)||(9448666-9448717)
chr1 (9-60)||(32024977-32025028)
chr1 (1-46)||(34228466-34228511)
chr1 (11-55)||(50013672-50013716)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-236)||(261975-262198)
[»] chr4 (11 HSPs)
chr4 (4-236)||(19987796-19988022)
chr4 (1-208)||(18930666-18930869)
chr4 (1-244)||(18936267-18936505)
chr4 (2-176)||(8107169-8107339)
chr4 (82-224)||(45015485-45015627)
chr4 (1-63)||(7833789-7833851)
chr4 (9-67)||(11028775-11028833)
chr4 (2-63)||(38978737-38978798)
chr4 (1-67)||(56101099-56101165)
chr4 (4-56)||(19987676-19987728)
chr4 (120-229)||(18977046-18977155)
[»] chr2 (14 HSPs)
chr2 (1-213)||(44279179-44279387)
chr2 (1-236)||(26533429-26533661)
chr2 (1-202)||(21088965-21089161)
chr2 (81-236)||(27187031-27187176)
chr2 (81-236)||(27836573-27836718)
chr2 (81-236)||(27836845-27836990)
chr2 (81-236)||(27187303-27187448)
chr2 (81-236)||(27837117-27837262)
chr2 (1-60)||(26533305-26533364)
chr2 (1-60)||(31074241-31074300)
chr2 (9-60)||(38144041-38144092)
chr2 (9-55)||(8596506-8596552)
chr2 (9-50)||(23974938-23974979)
chr2 (2-58)||(44279033-44279089)
[»] chr8 (15 HSPs)
chr8 (2-211)||(21397117-21397322)
chr8 (2-211)||(21791610-21791815)
chr8 (1-236)||(15937844-15938075)
chr8 (1-222)||(34373631-34373849)
chr8 (79-230)||(21403141-21403292)
chr8 (79-230)||(21797634-21797785)
chr8 (111-224)||(9410399-9410512)
chr8 (151-231)||(33446129-33446209)
chr8 (128-236)||(24195971-24196081)
chr8 (128-206)||(22576764-22576844)
chr8 (1-53)||(34074325-34074377)
chr8 (156-236)||(21008307-21008389)
chr8 (117-204)||(21396905-21396992)
chr8 (117-204)||(21791398-21791485)
chr8 (1-63)||(21008454-21008516)
[»] scaffold1212 (1 HSPs)
scaffold1212 (81-204)||(1954-2077)
[»] chr3 (4 HSPs)
chr3 (128-236)||(13843772-13843880)
chr3 (151-230)||(2706390-2706469)
chr3 (142-244)||(25315290-25315392)
chr3 (14-62)||(15002413-15002461)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-60)||(12627-12686)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10321607 - 10321842
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacac 100  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||  ||  ||||||||||||||||||| |    
T  10321607 caaaagattagtccaataggtaagagagcctcatggcttaagtaccacatcaaacacttttatttatctgatg--tg--ggactcctaacattgccacgc 10321702  T
Q  101 catttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcgg 200  Q
    | ||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  10321703 cctttaagaacagatgtccacgacaattttcactctatcggcactaacctgatggtagctctatcctttttggcggctacactcacctatcagtaatcgg 10321802  T
Q  201 tggagcactttaaatcagcctatatgtagccatttctgtg 240  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  10321803 tggagcactttaatccagcctatatgtagccatttctgtg 10321842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 22587000 - 22587208
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacac 100  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||  ||||  ||  |||||| |||||||| ||| |    
T  22587000 caaaagactagtccaataggtgtgagagcctcatggcttaagtactacatcaaacacttttagttactcgatg--tg--ggactcgtaacattgtcacgc 22587095  T
Q  101 catttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcgg 200  Q
    | |||||||  ||  |||||||||   |||| |||||||| |||||||| |||||| ||||| ||||||||||| ||| |||||||||||||||||||||    
T  22587096 cctttaagagtcggcgtccacgacgtctttccctctatcggcactgacctgatggttgccctttcctttttggcagcttcactcacctatcagtattcgg 22587195  T
Q  201 tggagcactttaa 213  Q
    ||| |||| ||||    
T  22587196 tggcgcaccttaa 22587208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 22598923 - 22599008
Alignment:
Q  128 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaa 213  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| || || |||||| |||||||||||||||||| ||| ||||    
T  22598923 tttcactctatcggcactgacccgatggtagccctttcctttttgacgacttcactcatctatcagtattcggtggaacaccttaa 22599008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 22599097 - 22599168
Alignment:
Q  2 aaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatg 73  Q
    |||||| ||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||    
T  22599097 aaaagactagtccaatagatgagagagcctcatgacttaagtaccatatcaaacacttttagttacccgatg 22599168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 35946619 - 35946500
Alignment:
Q  117 tccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatc 216  Q
    |||||||| | |||||||||| || || | ||||||| |||||||| || ||||||| |||| | ||||||||||||| |||| |||||||||||||  |    
T  35946619 tccacgacgactttcactctaccgacattaacccgatagtagccctttcttttttggaggcttctctcacctatcagtgttcgttggagcactttaatcc 35946520  T
Q  217 agcctatatgtagccatttc 236  Q
    | | |||| |||||||||||    
T  35946519 aacttataagtagccatttc 35946500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 32064428 - 32064523
Alignment:
Q  1 caaaagattagtccattaggtg-agagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccaca 99  Q
    ||||| |||||||||||||||| ||||||| ||| || |||| ||||||||||||||||||||||||  |||||| |    |||||||||||||||||||    
T  32064428 caaaaaattagtccattaggtggagagagcatcacggtttaaataccacatcaaacacttttatttatttgatgcgt----gactcctaacattgccaca 32064523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15173490 - 15173551
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacactttta 62  Q
    ||||||| |||||||  ||||| ||||||||||||| |||||||||||||||| ||||||||    
T  15173490 caaaagactagtccaaaaggtgggagagcctcatgggttaagtaccacatcaagcactttta 15173551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 15225969 - 15226058
Alignment:
Q  114 atgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcct-ttttggcggctacactcacctatcagtattcggtg 202  Q
    ||||||||||| | ||||||||||||| || ||| |||||||||| ||| |||| |||| |||||| |||| ||  ||||||||||||||    
T  15225969 atgtccacgacgactttcactctatcgacaatgatccgatggtagtcctttcctattttagcggcttcactaactcatcagtattcggtg 15226058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36976012 - 36975953
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttt 60  Q
    ||||||| |||||||  ||||| |||||||| ||| ||||| ||||||||||||||||||    
T  36976012 caaaagactagtccaacaggtgggagagccttatgacttaaataccacatcaaacacttt 36975953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 32064762 - 32064791
Alignment:
Q  38 ttaagtaccacatcaaacacttttatttac 67  Q
    ||||||||||||||||||||||||||||||    
T  32064762 ttaagtaccacatcaaacacttttatttac 32064791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 30045524 - 30045301
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaag 108  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||||| |||||| || |||  ||||  ||  ||||||||||||||||||| |  ||||||    
T  30045524 tagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgatatactcgatg--tg--ggactcctaacattgccacgctctttaag 30045429  T
Q  109 aaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcac 208  Q
    | ||||  ||||||||   ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||    
T  30045428 agccgacttccacgacggctttcactctatcgacactgacccgatggtagccctttcctttttggcggcttcactcacctatcagtattcggtggaacac 30045329  T
Q  209 tttaaatcagcctatatgtagccatttc 236  Q
     ||||  ||||||||| |||||| ||||    
T  30045328 cttaatccagcctataggtagccctttc 30045301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 28072129 - 28072279
Alignment:
Q  17 taggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaagaaccgatg 116  Q
    |||||| |||| |||||| |||||||||||||||||| ||||||| | ||| |||||  ||  |||| | |||||||  |||||| || |||| ||||      
T  28072129 taggtgggagaacctcatagcttaagtaccacatcaatcacttttttctacttgatg--tg--ggac-cttaacattatcacacccttcaagagccgaca 28072223  T
Q  117 tccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttg 172  Q
    ||||||||   ||||||||||||  ||||||||||||||||||||| |||||||||    
T  28072224 tccacgacggctttcactctatcagcactgacccgatggtagccctttcctttttg 28072279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 5467067 - 5466999
Alignment:
Q  136 tatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 204  Q
    |||| ||||||||| |||||||||||| |||||||||||| || || ||||||||||||||||| ||||    
T  5467067 tatcatcactgacctgatggtagccctttcctttttggcgacttcattcacctatcagtattcgatgga 5466999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 5467261 - 5467195
Alignment:
Q  128 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagt 194  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||   || || ||||||||||||    
T  5467261 tttcactctatcgacactgacccgatggtagccctttcctttttggaaacttcattcacctatcagt 5467195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 35033322 - 35033211
Alignment:
Q  128 tttcactctatcgt--cactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatat 225  Q
    |||||||||||||   |||||||| ||| ||||| || |||||||||  |||| ||||||| | | ||||||||||||| ||| |||||| ||||||||     
T  35033322 tttcactctatcgagacactgacctgatcgtagctctttcctttttgaaggcttcactcacatgttagtattcggtggaacaccttaaattagcctatag 35033223  T
Q  226 gtagccatttct 237  Q
     ||| |||||||    
T  35033222 atagtcatttct 35033211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 33447698 - 33447655
Alignment:
Q  30 ctcatggcttaagtaccacatcaaacacttttatttacctgatg 73  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||||    
T  33447698 ctcatggtttaagtaccacatcaaacaattttatttagctgatg 33447655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 1702062 - 1702114
Alignment:
Q  152 atggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 204  Q
    ||||||||||| | || ||| |||||| ||||||||||| |||||||||||||    
T  1702062 atggtagcccttttctattttgcggcttcactcacctattagtattcggtgga 1702114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 1702217 - 1702249
Alignment:
Q  24 gagagcctcatggcttaagtaccacatcaaaca 56  Q
    |||| ||||||||||||||||||||||||||||    
T  1702217 gagaacctcatggcttaagtaccacatcaaaca 1702249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 239
Target Start/End: Complemental strand, 25194334 - 25194135
Alignment:
Q  36 gcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactc 135  Q
    ||||||||||||||||||||||||||||||| | |||  |||  ||||||||||||||| ||| || ||||||| |||| ||||||| | | ||||||||    
T  25194334 gcttaagtaccacatcaaacacttttatttatccgat--atg--ggactcctaacattgtcacgccctttaagagccgacgtccacggcgactttcactc 25194239  T
Q  136 tatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccattt 235  Q
    ||||| |||| || | ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||  |||||||||  ||||| |||    
T  25194238 tatcgacactaactcaatggtagccctttcctttttggaggcttcactcacctatcagtattcggtggagcactttaatccagcctatagttagcccttt 25194139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 25194500 - 25194339
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaag 108  Q
    |||| ||||||| | ||||||||||||||||| |||| | ||||||||||||||||||||| ||  |||  ||||||||||||||| ||| || ||||||    
T  25194500 tagttcattaggggggagagcctcatggcttatgtactatatcaaacacttttatttacctaat--atg--ggactcctaacattgtcacgccctttaag 25194405  T
Q  109 aaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggc 174  Q
    |  |||||||||||||  ||||||||||||||  |||||||||||||||||||| | |||||||||    
T  25194404 agtcgatgtccacgacggttttcactctatcgatactgacccgatggtagcccttttctttttggc 25194339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 23072061 - 23071928
Alignment:
Q  80 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 179  Q
    ||||||||||||||||||| || ||||||| || | |||||||||   ||||||||||||| | |||||| |||||||||| | ||| |||||||||||     
T  23072061 ggactcctaacattgccacgccctttaagagccaacgtccacgacggctttcactctatcggctctgacctgatggtagccatttcccttttggcggctt 23071962  T
Q  180 cactcacctatcagtattcggtggagcactttaa 213  Q
    |||||||||||||||| |||||||| ||| ||||    
T  23071961 cactcacctatcagtactcggtggaacaccttaa 23071928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 3958161 - 3958316
Alignment:
Q  80 ggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggcta 179  Q
    ||||||||||||||| ||| || ||||||| ||| |||||||| |   ||||||||||||| |||| ||  |||||||||||| |||||||| ||||||     
T  3958161 ggactcctaacattgacacgccctttaagagccggtgtccacggcggctttcactctatcggcactaacatgatggtagccctttccttttt-gcggctt 3958259  T
Q  180 cactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttc 236  Q
    || |||| ||||||||||||||| | ||| ||||  || |||||| |||||| ||||    
T  3958260 cattcacatatcagtattcggtgaaacaccttaatccaacctataagtagccctttc 3958316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25194074 - 25194002
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatg 73  Q
    ||||||| || |||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  25194074 caaaagactaatccattaggtggaagagcctcatggcttaagtaccacatcaaacatttttatttacccgatg 25194002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 2414348 - 2414532
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaag 108  Q
    |||| ||||||||| ||||| |||||| ||||| |||||||| ||||| ||||||||||| |  |  || |  |||||| |||||| |||||| ||||||    
T  2414348 tagttcattaggtgggagagtctcatgacttaaataccacattaaacaattttatttacccgtag--tgga--actcctgacattgtcacaccctttaag 2414443  T
Q  109 aaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtatt 197  Q
    || | | ||||| ||| | ||||| ||||||| ||| |||  ||||||||||||||| ||||  |||||| ||| ||||||||||||||    
T  2414444 aatcaacgtccatgacgactttcaatctatcgacaccgacttgatggtagccctatctttttctgcggcttcacccacctatcagtatt 2414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 17944650 - 17944589
Alignment:
Q  2 aaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttat 63  Q
    |||||| ||||||||||| || |||||||||||||||||||||||||||| | |||||||||    
T  17944650 aaaagactagtccattagatgggagagcctcatggcttaagtaccacatcgagcacttttat 17944589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 13789539 - 13789603
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatg 73  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||| |||||||| ||||| ||||    
T  13789539 tagtccaataggtgggagagccccatggcttaagtaccacatcaagcacttttagttacccgatg 13789603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 37223625 - 37223584
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacat 50  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  37223625 tagtccattaggtgggagagcctaatggcttaagtaccacat 37223584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 23072416 - 23072246
Alignment:
Q  17 taggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaagaaccgatg 116  Q
    |||||| |||| | |||||| |||||||||||||||| || ||| || |||  ||||  ||  ||||||||||||||| | | || ||||||   |||||    
T  23072416 taggtgggagaacttcatggtttaagtaccacatcaagcattttgatctactcgatg--tg--ggactcctaacattgtcgcgccctttaagtgtcgatg 23072321  T
Q  117 tccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatc 191  Q
    |||| ||| |  |||||||||||| |||||||| |||||||||| | ||| |||||  || | ||||||||||||    
T  23072320 tccatgacgacgttcactctatcgacactgacctgatggtagccatttcccttttgttggattcactcacctatc 23072246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 2304971 - 2304920
Alignment:
Q  12 tccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttat 63  Q
    |||||| |||| |||||||||||| ||||| || ||||||||||||||||||    
T  2304971 tccatttggtgggagagcctcatgacttaaatatcacatcaaacacttttat 2304920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23071830 - 23071775
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaaca 56  Q
    ||||||| ||||||| |||||| |||| | |||||| |||||||||||||||||||    
T  23071830 caaaagactagtccaataggtgggagaacttcatggtttaagtaccacatcaaaca 23071775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 37223917 - 37223858
Alignment:
Q  4 aagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttat 63  Q
    |||| |||||||||||||| ||||| ||||||||||||||||| |||  | |||||||||    
T  37223917 aagactagtccattaggtgggagagtctcatggcttaagtacctcattgagcacttttat 37223858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 15019109 - 15019068
Alignment:
Q  24 gagagcctcatggcttaagtaccacatcaaacacttttattt 65  Q
    |||| ||||||| ||||| |||||||||||||||||||||||    
T  15019109 gagaacctcatgacttaaataccacatcaaacacttttattt 15019068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 7406811 - 7406855
Alignment:
Q  169 tttggcggctacactcacctatcagtattcggtggagcactttaa 213  Q
    |||||||| | ||||||||||||||||||||||||| ||| ||||    
T  7406811 tttggcggtttcactcacctatcagtattcggtggaacaccttaa 7406855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 7741613 - 7741657
Alignment:
Q  151 gatggtagccctatcctttttggcggctacactcacctatcagta 195  Q
    |||||||||||| ||| ||||| ||||| ||||||||||||||||    
T  7741613 gatggtagccctttccattttgacggcttcactcacctatcagta 7741657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 15019302 - 15019226
Alignment:
Q  128 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 204  Q
    |||||||| |||| ||||||   |||||||||| | ||||||||| | ||| | |||||||||||||||||| ||||    
T  15019302 tttcactcgatcgacactgatatgatggtagccatttcctttttgacagctccgctcacctatcagtattcgatgga 15019226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 32025324 - 32025101
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaag 108  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||||| |||||| || |||  ||||  ||  ||||||||||||||||||| |  ||||||    
T  32025324 tagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgatatactcgatg--tg--ggactcctaacattgccacgctctttaag 32025229  T
Q  109 aaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcac 208  Q
    | |||| || |||| |   ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||    
T  32025228 agccgacgttcacggcggctttcactctatcgacactgacccgatggtagccctttcctttttggcggcttcactcacctatcagtattcggtggaacac 32025129  T
Q  209 tttaaatcagcctatatgtagccatttc 236  Q
     ||||  ||||||||| |||||| ||||    
T  32025128 cttaatccagcctataggtagccctttc 32025101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 32025620 - 32025397
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaag 108  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||||| |||||| || |||  ||||  ||  ||||||||||||||||||| |  ||||||    
T  32025620 tagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgatatactcgatg--tg--ggactcctaacattgccacgctctttaag 32025525  T
Q  109 aaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcac 208  Q
    | |||| || |||| |   ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||    
T  32025524 agccgacgttcacggcggctttcactctatcgacactgacccgatggtagccctttcctttttggcggcttcactcacctatcagtattcggtggaacac 32025425  T
Q  209 tttaaatcagcctatatgtagccatttc 236  Q
     ||||  ||||||||| |||||| ||||    
T  32025424 cttaatccagcctataggtagccctttc 32025397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4119201 - 4119139
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttat 63  Q
    ||||||| ||||||||| ||||  |||||||||||||||||||||||  || |||||||||||    
T  4119201 caaaagactagtccattcggtggcagagcctcatggcttaagtaccatgtcgaacacttttat 4119139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 9448666 - 9448717
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttt 60  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||    
T  9448666 tagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcacttt 9448717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 32025028 - 32024977
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttt 60  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||    
T  32025028 tagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcacttt 32024977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34228466 - 34228511
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtacc 46  Q
    ||||||| |||||||||| ||| ||||||||||| |||||||||||    
T  34228466 caaaagactagtccattaagtgggagagcctcatagcttaagtacc 34228511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 50013672 - 50013716
Alignment:
Q  11 gtccattaggtgagagagcctcatggcttaagtaccacatcaaac 55  Q
    |||||||| |||||||||| ||||| ||||| |||||||||||||    
T  50013672 gtccattaagtgagagagcatcatgacttaaataccacatcaaac 50013716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 262198 - 261975
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccatttaag 108  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||||| |||||| || |||  ||||  ||  ||||||||||||||||||| |  ||||||    
T  262198 tagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgatatactcgatg--tg--ggactcctaacattgccacgctctttaag 262103  T
Q  109 aaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcac 208  Q
    | |||| || |||| |   ||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||    
T  262102 agccgacgttcacggcggctttcactctatcgacactgacctgatggtagccctttcctttttggcggcttcactcacctatcagtattcggtggaacac 262003  T
Q  209 tttaaatcagcctatatgtagccatttc 236  Q
     ||||  ||||||||| |||||| ||||    
T  262002 cttaatccagcctataggtagccctttc 261975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 19988022 - 19987796
Alignment:
Q  4 aagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacaccat 103  Q
    |||| ||||||| |||||| |||| ||||||||||||||||||||||||| || ||| || |||  ||||  ||  ||||||||||||||||||| || |    
T  19988022 aagactagtccaataggtgggagaacctcatggcttaagtaccacatcaagcattttgatctactcgatg--tg--ggactcctaacattgccacgccct 19987927  T
Q  104 ttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtgg 203  Q
    |||||| |||| |||||||||   |||||||  |||| |||||||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||    
T  19987926 ttaagagccgacgtccacgacggctttcact--atcggcactgacctgatggtagccctttcctttttggaggcttcactcacctatcagtattcggtgg 19987829  T
Q  204 agcactttaaatcagcctatatgtagccatttc 236  Q
    | ||| ||||  ||||||||| |||||| ||||    
T  19987828 aacaccttaatccagcctataggtagccctttc 19987796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 18930869 - 18930666
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacac 100  Q
    ||||| ||| || |||||||||  |||| ||||||| ||||||||||||||||  |||||||||||   |||| |    |||||||||| || | |||||    
T  18930869 caaaaaattggttcattaggtggaagagtctcatggtttaagtaccacatcaagtacttttatttagtcgatgta----ggactcctaaaatagtcacac 18930774  T
Q  101 catttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcgg 200  Q
    | ||||||| |||| ||||||||| | ||| ||||||||| ||||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  18930773 cttttaagagccgacgtccacgacgacttttactctatcggcactgacctaatggtagccctttcctttttggcggcttcactcacctatcagtattcgg 18930674  T
Q  201 tggagcac 208  Q
    ||||||||    
T  18930673 tggagcac 18930666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 18936505 - 18936267
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacac 100  Q
    ||||| |||||||||||||||  || || ||||||| |||||||||| ||||||||| ||||||||    ||  ||| |||||||||||||||||||| |    
T  18936505 caaaaaattagtccattaggtaggaaagtctcatggtttaagtaccaaatcaaacacgtttattta----atcgatgtaggactcctaacattgccacgc 18936410  T
Q  101 catttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcgg 200  Q
    | |||||||  ||  ||||||||| | ||||||||||||   |||||||| |||||||| || ||||||||||||||| |||||||||||||||||||      
T  18936409 cctttaagagtcggcgtccacgacgactttcactctatcaa-actgacccaatggtagctctttcctttttggcggcttcactcacctatcagtattcaa 18936311  T
Q  201 tggagcactttaaatcagcctatatgtagccatttctgtgatcc 244  Q
    |||||||| ||||  ||   ||||||||||| |||| |||||||    
T  18936310 tggagcaccttaatccataatatatgtagccctttccgtgatcc 18936267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 8107169 - 8107339
Alignment:
Q  2 aaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacacc 101  Q
    |||||||||||||| | |||| |||| | ||||||||||||||||  |||||||||||| || ||| |||||  ||  ||||| |||||||||||||  |    
T  8107169 aaaagattagtccaatgggtgggagaacatcatggcttaagtaccggatcaaacactttgatatacttgatg--tg--ggacttctaacattgccacgtc 8107264  T
Q  102 atttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcgg 176  Q
     ||||||| |||| |||||||||   ||||||||| ||| || |||||||||| |||| || |||||||||||||    
T  8107265 ctttaagagccgacgtccacgacggctttcactctgtcggcattgacccgatgatagctctttcctttttggcgg 8107339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 45015485 - 45015627
Alignment:
Q  82 actcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctaca 181  Q
    |||||||| |||| |||||| |||||||||  | || |||| || |||||||||||| |  | |||||||||||||||| |  |||||||||||||| ||    
T  45015485 actcctaatattgtcacaccctttaagaacttacgttcacggcagttttcactctattgatattgacccgatggtagccattacctttttggcggcttca 45015584  T
Q  182 ctcacctatcagtattcggtggagcactttaaatcagcctata 224  Q
    |||||||||| |||||  ||||||||| ||||  |||||||||    
T  45015585 ctcacctatcggtatttagtggagcaccttaatccagcctata 45015627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7833789 - 7833851
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttat 63  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||    
T  7833789 caaaagactagtccattaggtgggagagcctcatgacttaagtaccacatcaagcacttttat 7833851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 11028833 - 11028775
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttac 67  Q
    ||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||    
T  11028833 tagtccattaggtgagagatcctcatggtttaaatatcacatcaaacacttttatttac 11028775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 38978798 - 38978737
Alignment:
Q  2 aaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttat 63  Q
    |||||| || |||||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  38978798 aaaagactaatccattaggtggaagagcctcatggtttaagtaccacatcaaacacttttat 38978737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 56101099 - 56101165
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttac 67  Q
    ||||||| ||||||| ||||||  |||||| |||| ||||| |||||||||||||||||||||||||    
T  56101099 caaaagactagtccaataggtgctagagccccatgacttaaataccacatcaaacacttttatttac 56101165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 19987728 - 19987676
Alignment:
Q  4 aagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaaca 56  Q
    |||| ||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  19987728 aagactagtccaataggtgggagaacctcatggcttaagtaccacatcaaaca 19987676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 18977155 - 18977046
Alignment:
Q  120 acgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagc 219  Q
    |||||||  |||||||||||| ||||  ||||||| || || |  ||||||| |||||| ||||||| ||||||||||||||  ||||| ||||  || |    
T  18977155 acgacaacattcactctatcgacactagcccgatgataacctttcccttttttgcggcttcactcacttatcagtattcggtaaagcaccttaatccaac 18977056  T
Q  220 ctatatgtag 229  Q
    ||||||||||    
T  18977055 ctatatgtag 18977046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 44279387 - 44279179
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacac 100  Q
    ||||||||||||| | |||||| |||| ||||| || ||||||||| ||||||||||||| || ||| |||||  ||  ||||||||||||||||||| |    
T  44279387 caaaagattagtctaataggtgggagaacctcaaggtttaagtaccgcatcaaacactttgatctacttgatg--tg--ggactcctaacattgccacgc 44279292  T
Q  101 catttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcgg 200  Q
    | |||| || | || ||| ||||| | ||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||| ||||||||||    
T  44279291 cctttaggagcagacgtctacgacgactttcactctatcgtcactgacccgatgatagccctttcctttttgacggcttcactcacctaccagtattcgg 44279192  T
Q  201 tggagcactttaa 213  Q
    |||| ||| ||||    
T  44279191 tggaacaccttaa 44279179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26533661 - 26533429
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggctt-aagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccaca 99  Q
    ||||||| ||||||| |||||| |||| |||||||| || |||||||||||||| |||||| || |||  ||||  ||  ||||||| |||||||||||     
T  26533661 caaaagactagtccaataggtgggagaacctcatggttttaagtaccacatcaagcactttgatctactcgatg--tg--ggactccaaacattgccacg 26533566  T
Q  100 ccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcg 199  Q
    || ||||||| | || ||||||| |   ||||||||||||| ||||||||| ||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  26533565 ccctttaagagctgacgtccacggcggctttcactctatcgacactgacccaatggtagccctttcctttttggtggcttcactcacctatcagtattcg 26533466  T
Q  200 gtggagcactttaaatcagcctatatgtagccatttc 236  Q
    ||||| ||| ||||  ||||||||| |||||| ||||    
T  26533465 gtggaacaccttaatccagcctataggtagccctttc 26533429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 21089161 - 21088965
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacac 100  Q
    ||||||| || ||||||||||   ||||||| |||| |||| |||||||| ||||||| ||||||||  ||||  ||  |||||||||||||| | || |    
T  21089161 caaaagactaatccattaggtcgcagagcctgatggtttaaataccacataaaacactcttatttactcgatg--tg--ggactcctaacatttcaacgc 21089066  T
Q  101 catttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcgg 200  Q
      ||||||| |||| |||||||||   ||||||||||||| |||| || |||   ||||||| ||||||||||||||| |||||||||||||||||||||    
T  21089065 tctttaagagccgacgtccacgacggctttcactctatcggcact-actcgacaatagccctttcctttttggcggcttcactcacctatcagtattcgg 21088967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 27187031 - 27187176
Alignment:
Q  81 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 180  Q
    |||||||||||||||||| || ||||||| |||| |||||||   | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27187031 gactcctaacattgccacgccctttaagagccgacgtccacggtgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27187120  T
Q  181 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttc 236  Q
    | |||||||||||||||||||||| ||| ||||  ||||||||| |||||| ||||    
T  27187121 aatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttc 27187176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 27836573 - 27836718
Alignment:
Q  81 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 180  Q
    |||||||||||||||||| || ||||||| |||| |||||||   | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27836573 gactcctaacattgccacgccctttaagagccgacgtccacggtgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27836662  T
Q  181 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttc 236  Q
    | |||||||||||||||||||||| ||| ||||  ||||||||| |||||| ||||    
T  27836663 aatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttc 27836718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 27836845 - 27836990
Alignment:
Q  81 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 180  Q
    |||||||||||||| ||| || ||||||| |||| ||||||| | | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27836845 gactcctaacattgtcacgccctttaagagccgacgtccacggcgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27836934  T
Q  181 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttc 236  Q
    | |||||||||||||||||||||| ||| ||||  ||||||||| |||||| ||||    
T  27836935 aatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttc 27836990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 27187303 - 27187448
Alignment:
Q  81 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 180  Q
    |||||||||||||| ||| || ||||||| |||| ||||||| | | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27187303 gactcctaacattgtcacgccctttaagagccgacgtccacggcgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27187392  T
Q  181 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttc 236  Q
    | |||||||||||||||||||||| ||| ||||  || |||||| |||||| ||||    
T  27187393 aatcacctatcagtattcggtggaacaccttaatacaacctataggtagccctttc 27187448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 27837117 - 27837262
Alignment:
Q  81 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 180  Q
    |||||||||||||| ||| || ||||||| |||| ||||||| | | ||||||||||||| |||||||||          || ||||||||||||||| |    
T  27837117 gactcctaacattgtcacgccctttaagagccgacgtccacggcgactttcactctatcggcactgaccc----------ctttcctttttggcggcttc 27837206  T
Q  181 actcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttc 236  Q
    | |||||||||||||||||||||| ||| ||||  || |||||| |||||| ||||    
T  27837207 aatcacctatcagtattcggtggaacaccttaatacaacctataggtagccctttc 27837262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26533364 - 26533305
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttt 60  Q
    ||||||| |||||||||||||| |||| |||||||| |||||||||||||||| ||||||    
T  26533364 caaaagactagtccattaggtgggagaacctcatggtttaagtaccacatcaagcacttt 26533305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31074300 - 31074241
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttt 60  Q
    ||||||| ||||||| ||| |  |||| |||||||||||||||||||||||||| |||||    
T  31074300 caaaagactagtccaatagatatgagaacctcatggcttaagtaccacatcaaatacttt 31074241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 38144092 - 38144041
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttt 60  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||    
T  38144092 tagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcacttt 38144041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 8596506 - 8596552
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacatcaaac 55  Q
    ||||||| |||||| |||| ||||| |||||||||||||||||||||    
T  8596506 tagtccaataggtgggagaacctcaaggcttaagtaccacatcaaac 8596552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 23974979 - 23974938
Alignment:
Q  9 tagtccattaggtgagagagcctcatggcttaagtaccacat 50  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  23974979 tagtacattaggtgaaagagtctcatggcttaagtaccacat 23974938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 44279089 - 44279033
Alignment:
Q  2 aaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacact 58  Q
    |||||| || |||| |||||| |||| |||||||| ||||||||||||||| |||||    
T  44279089 aaaagactactccaataggtgggagaacctcatggtttaagtaccacatcatacact 44279033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 21397322 - 21397117
Alignment:
Q  2 aaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacacc 101  Q
    |||||| |||||||||||||| ||||||| | ||| |||| ||||||||||| ||||||||| |||  || |  ||  ||||||||||||||||||||||    
T  21397322 aaaagactagtccattaggtgggagagccccgtggtttaaataccacatcaatcacttttatctactcgacg--tg--ggactcctaacattgccacacc 21397227  T
Q  102 atttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggt 201  Q
     | ||| | || |  |||||||| | ||||||||||||| ||||||||||||||||||||| |||| |||| ||||| |||||||||||||||||| |||    
T  21397226 ctataaaagccaacatccacgacgactttcactctatcggcactgacccgatggtagccctttcctctttgacggctgcactcacctatcagtatttggt 21397127  T
Q  202 ggagcacttt 211  Q
    ||| ||||||    
T  21397126 ggaacacttt 21397117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 21791815 - 21791610
Alignment:
Q  2 aaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacacc 101  Q
    |||||| |||||||||||||| ||||||| | ||| |||| ||||||||||| ||||||||| |||  || |  ||  ||||||||||||||||||||||    
T  21791815 aaaagactagtccattaggtgggagagccccgtggtttaaataccacatcaatcacttttatctactcgacg--tg--ggactcctaacattgccacacc 21791720  T
Q  102 atttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggt 201  Q
     | ||| | || |  |||||||| | ||||||||||||| ||||||||||||||||||||| |||| |||| ||||| |||||||||||||||||| |||    
T  21791719 ctataaaagccaacatccacgacgactttcactctatcggcactgacccgatggtagccctttcctctttgacggctgcactcacctatcagtatttggt 21791620  T
Q  202 ggagcacttt 211  Q
    ||| ||||||    
T  21791619 ggaacacttt 21791610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15937844 - 15938075
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacac 100  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||||||||||| || |||||| |||| ||||  ||  ||||| ||||||||||||| |    
T  15937844 caaaagactagtccattaggtgggagagactcatggcttaagtaccacatcaagcaattttatatacccgatg--tg--ggacttctaacattgccacgc 15937939  T
Q  101 catttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcgg 200  Q
    | ||||||| ||||||| ||||     ||||| ||||||| |||| |||||||||||||||| |   | |||| |||| ||||||||||||||||||| |    
T  15937940 cctttaagagccgatgtacacggaggctttcattctatcggcactaacccgatggtagccctttttctattggtggcttcactcacctatcagtattcag 15938039  T
Q  201 tggagcactttaaatcagcctatatgtagccatttc 236  Q
    |||||||| ||||  ||| ||||| |||||| ||||    
T  15938040 tggagcaccttaatccagtctataggtagccctttc 15938075  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34373631 - 34373849
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttatttacctgatgcatgcaggactcctaacattgccacac 100  Q
    ||||||| ||||||| |||||| |||| ||||| | ||||||||| ||||||| |||||| || |||  ||||  ||   || |||||||||||||||||    
T  34373631 caaaagactagtccaataggtgggagaacctcacgacttaagtactacatcaagcactttaatctactcgatg--tga--gagtcctaacattgccacac 34373726  T
Q  101 catttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcc-tttttggcggctacactcacctatcagtattcg 199  Q
    | ||||||| |||| ||||||||||| ||||||||||||| || | || |||||| |||||| ||| ||||||| |||| ||||||||||||||||||||    
T  34373727 cctttaagagccgacgtccacgacaactttcactctatcggcaataactcgatggcagccctttccttttttggtggcttcactcacctatcagtattcg 34373826  T
Q  200 gtggagcactttaaatcagccta 222  Q
     |||| ||| ||||  |||||||    
T  34373827 atggaacaccttaatccagccta 34373849  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 21403292 - 21403141
Alignment:
Q  79 aggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggct 178  Q
    |||||||||||||||| ||| || ||||||| ||||  || ||| ||| ||||||||||| | |||||| |||||||||||||| ||||||||||||| |    
T  21403292 aggactcctaacattgtcacgccctttaagagccgacatctacggcaactttcactctattggcactgagccgatggtagccctctcctttttggcggtt 21403193  T
Q  179 acactcacctatcagtattcggtggagcactttaaatcagcctatatgtagc 230  Q
    |||| |||| ||||||||| |||||| ||| ||||  ||||||||| |||||    
T  21403192 acacccaccaatcagtatttggtggaacaccttaatccagcctataggtagc 21403141  T

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Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 21797785 - 21797634
Alignment:
Q  79 aggactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggct 178  Q
    |||||||||||||||| ||| || ||||||| ||||  || ||| ||| ||||||||||| | |||||| |||||||||||||| ||||||||||||| |    
T  21797785 aggactcctaacattgtcacgccctttaagagccgacatctacggcaactttcactctattggcactgagccgatggtagccctctcctttttggcggtt 21797686  T
Q  179 acactcacctatcagtattcggtggagcactttaaatcagcctatatgtagc 230  Q
    |||| |||| ||||||||| |||||| ||| ||||  ||||||||| |||||    
T  21797685 acacccaccaatcagtatttggtggaacaccttaatccagcctataggtagc 21797634  T

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Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 9410512 - 9410399
Alignment:
Q  111 ccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactt 210  Q
    |||| ||||||||| | || |||||||||| |||||| |||||||||||  | ||||||||||||||| ||||||| || ||||||| |||||| ||| |    
T  9410512 ccgacgtccacgacgacttgcactctatcggcactgatccgatggtagcattttcctttttggcggcttcactcacataccagtatttggtggaacacct 9410413  T
Q  211 taaatcagcctata 224  Q
    ||| ||||||||||    
T  9410412 taattcagcctata 9410399  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 33446209 - 33446129
Alignment:
Q  151 gatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgtagcc 231  Q
    |||||||||||| | ||||||||||||| || ||||||||||||||| ||| |||||| ||||  ||||||||||||||||    
T  33446209 gatggtagcccttttctttttggcggcttcattcacctatcagtatttggttgagcaccttaatccagcctatatgtagcc 33446129  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 24195971 - 24196081
Alignment:
Q  128 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcac--ctatcagtattcggtggagcactttaaatcagcctatat 225  Q
    ||||||| ||||| || ||| |||||||||||||| |||||||||| || | ||||| |  ||||||||||||| | |||||| |||| ||||||||||     
T  24195971 tttcactttatcgacattgatccgatggtagccctttcctttttggtggtttcactctctcctatcagtattcgatagagcaccttaattcagcctatag 24196070  T
Q  226 gtagccatttc 236  Q
    |||||| ||||    
T  24196071 gtagccctttc 24196081  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 22576764 - 22576844
Alignment:
Q  128 tttcactctatcgtcactgacccgatggtagccctatcct--ttttggcggctacactcacctatcagtattcggtggagc 206  Q
    ||||||||||||| |||| || ||||| ||||||| |  |  |||||||| || |||||||||||||||||||||||||||    
T  22576764 tttcactctatcgccactaactcgatgctagcccttttttgtttttggcgacttcactcacctatcagtattcggtggagc 22576844  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34074377 - 34074325
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaa 53  Q
    ||||||| ||||||| |||||| |||||||||||| |||||||| ||||||||    
T  34074377 caaaagactagtccaataggtgggagagcctcatgccttaagtatcacatcaa 34074325  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 21008307 - 21008389
Alignment:
Q  156 tagccctatcctttttggcggctacactcacctatcag--tattcggtggagcactttaaatcagcctatatgtagccatttc 236  Q
    |||||||  |||||||||||||| ||||||||||||||  |||| |||||| ||| ||||  ||||||||| |||||| ||||    
T  21008307 tagccctcgcctttttggcggcttcactcacctatcagtatatttggtggaacaccttaatccagcctataggtagccctttc 21008389  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 21396905 - 21396992
Alignment:
Q  117 tccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 204  Q
    ||||| |||| |||||||||||   ||||||||| ||  |||||   |||||||||||| || ||||||||||| |||||||||||||    
T  21396905 tccacaacaactttcactctattaacactgacccaataatagccaattcctttttggcgccttcactcacctataagtattcggtgga 21396992  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 21791398 - 21791485
Alignment:
Q  117 tccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtgga 204  Q
    ||||| |||| |||||||||||   ||||||||| ||  |||||   |||||||||||| || ||||||||||| |||||||||||||    
T  21791398 tccacaacaactttcactctattaacactgacccaataatagccaattcctttttggcgccttcactcacctataagtattcggtgga 21791485  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21008454 - 21008516
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttttat 63  Q
    |||||||  ||||||||||||| | ||||||| |  ||||||||||||| |||||||||||||    
T  21008454 caaaagacaagtccattaggtgggggagcctcgtaacttaagtaccacaacaaacacttttat 21008516  T

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Target: scaffold1212 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 2077 - 1954
Alignment:
Q  81 gactcctaacattgccacaccatttaagaaccgatgtccacgacaattttcactctatcgtcactgacccgatggtagccctatcctttttggcggctac 180  Q
    ||||||||| ||||||||| | ||||||| |||| ||||||| | | ||| |||||| || |||||||||||||||||| || ||||||||||||||| |    
T  2077 gactcctaatattgccacatcctttaagagccgacgtccacggcgacttttactctaccgacactgacccgatggtagctctttcctttttggcggcttc 1978  T
Q  181 actcacctatcagtattcggtgga 204  Q
    |||||||||| |||||| ||||||    
T  1977 actcacctattagtattgggtgga 1954  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 13843772 - 13843880
Alignment:
Q  128 tttcactctatcgtcactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgt 227  Q
    ||||||||||||  ||||||||||||||||||||| || |||||| ||||| |||||||||||||||||||| |||| ||| ||||  ||| ||||| ||    
T  13843772 tttcactctatctgcactgacccgatggtagccctttcttttttgacggcttcactcacctatcagtattcgatggaacaccttaatccagtctataggt 13843871  T
Q  228 agccatttc 236  Q
    |||| ||||    
T  13843872 agccctttc 13843880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 2706390 - 2706469
Alignment:
Q  151 gatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgtagc 230  Q
    |||||||||||| || ||||||||||||  ||||||||||| |||||||||||| ||  ||||  ||||||||| |||||    
T  2706390 gatggtagccctttcttttttggcggctttactcacctatcggtattcggtggaacatcttaatccagcctataagtagc 2706469  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 25315392 - 25315290
Alignment:
Q  142 cactgacccgatggtagccctatcctttttggcggctacactcacctatcagtattcggtggagcactttaaatcagcctatatgtagccatttctgtga 241  Q
    |||||||  ||||| | |||| |||| ||| |||||| ||||||||||||| ||||| |||||||| || ||  ||| ||||| |||||| |||||||||    
T  25315392 cactgacttgatggcaaccctttcctattttgcggcttcactcacctatcaatattcagtggagcatttcaatccagtctataggtagccctttctgtga 25315293  T
Q  242 tcc 244  Q
    |||    
T  25315292 tcc 25315290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 15002461 - 15002413
Alignment:
Q  14 cattaggtgagagagcctcatggcttaagtaccacatcaaacactttta 62  Q
    |||||||||| ||||||||||||||||||||| || || | ||||||||    
T  15002461 cattaggtgatagagcctcatggcttaagtactacgtcgagcactttta 15002413  T

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Target: scaffold0251 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12686 - 12627
Alignment:
Q  1 caaaagattagtccattaggtgagagagcctcatggcttaagtaccacatcaaacacttt 60  Q
    ||||||| ||||||| ||||||  ||| |||||||||||||||| |||||||| ||||||    
T  12686 caaaagactagtccaataggtggaagaacctcatggcttaagtaacacatcaagcacttt 12627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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