View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_low_24 (Length: 580)
Name: NF1498_low_24
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 13 - 565
Target Start/End: Complemental strand, 40433260 - 40432708
Alignment:
| Q |
13 |
aatatttattctcctatttaatgtaccagttctttattttcttgtggaagagaacccgcagacatgcgatgctcgacaatgcaacctaacaaatctctgg |
112 |
Q |
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| T |
40433260 |
aatatttattctcctatttaatgtaccagttctttattttcttgtggaagagaacccgcagacatgcgatgctcgacaatgcaacctaacaaatctctgg |
40433161 |
T |
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| Q |
113 |
tagcttgcactctttcttcttcatctttgtaccggttctcgattggatccaccagctatataaagtgtagaatgagaacaagaagtatagcacaggaaac |
212 |
Q |
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| T |
40433160 |
tagcttgcactctttcttcttcatctttgtaccggttctcgattggatccaccagctatataaagtgtagaatgagaacaagaagtatagcacaggaaac |
40433061 |
T |
|
| Q |
213 |
atggagatcggagaacaaaaagataacctgttttagatcttctagttttgcaaaataagcatgtactgtttcatcatcacgttcactgtaaagccattcc |
312 |
Q |
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| T |
40433060 |
atggagatcggagaacaaaaagataacctgttttagatcttctagttttgcaaaataagcatgtactgtttcatcatcacgttcactgtaaagccattcc |
40432961 |
T |
|
| Q |
313 |
tcagtctctagcaggctcctggatatgccatccttctcttgttcacttgcgaattttcggtattcgtttaagagctattcataaaaatgcacaaattatt |
412 |
Q |
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| T |
40432960 |
tcagtctctagcaggctcctggatatgccatccttctcttgttcacttgcgaattttcggtattcgtttaagagctattcataaaaatgcacaaattatt |
40432861 |
T |
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| Q |
413 |
aaatgccaagccatcaggaaatatagaacatacacacataaagccgtgtattaaataattggcataaaggataaagaatgatagagattttaatttcatt |
512 |
Q |
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| T |
40432860 |
aaatgccaagccatcaggaaatatagaacatacacacataaagccgtgtattaaataattggcataaaggataaagaaggatagagattttaatttcatt |
40432761 |
T |
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| Q |
513 |
tcatatgcagatttgatacaaagcagaataaaacaatatccctagacaccagt |
565 |
Q |
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| T |
40432760 |
tcatatgcagatttgatacaaagcagaataaaacaatatccctagacaccagt |
40432708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 359
Target Start/End: Complemental strand, 20263301 - 20263065
Alignment:
| Q |
123 |
tctttcttcttcatctttgtaccggttctcgattggatccaccagctatataaagtgtagaatgagaacaagaagtatagcacaggaaaca-tggagatc |
221 |
Q |
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||||||||| |||||||||||||| |||| ||||||||||||||||| | ||| ||||| || ||||| ||||||| || |||||| || | || |
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| T |
20263301 |
tctttcttcatcatctttgtaccgaatctcaattggatccaccagctacagaaatagtagattggaaacaataagtataacaagagaaacattgaaaata |
20263202 |
T |
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| Q |
222 |
ggagaacaaaaagataacctgttttagatcttctagttttgcaaaataagcatgtactgtttcatcatcacgttcactgtaaagccattcctcagtctct |
321 |
Q |
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| T |
20263201 |
gaaaagcaaaaaaat-acctttttcagatcttctagttttgaggtataagcgtgttcagtttcatcatcaccgtcctcataaagccaatcctcagtctct |
20263103 |
T |
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| Q |
322 |
agcaggctcctggatatgccatccttctcttgttcact |
359 |
Q |
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| T |
20263102 |
tgcaaactcctagatatgacatccctctcttggtcact |
20263065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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